SMTL ID : 9brd.1

Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-1-1-3-1-3-1-3-1-1-1-1-1-1-1-9-1-mer
Ligands
8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- MAN- GLC- GLC- GLC- MAN- MAN: alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
5 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
9 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
1 x WJP: methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate(Non-covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x LP3: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
30 x CLR: CHOLESTEROL(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Coupland, C.E. et al., High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles. Science (2024)
Release Date
2024-06-26
Peptides
H(+)-transporting two-sector ATPase: ABC
V-type proton ATPase subunit B, brain isoform: DEF
V-type proton ATPase subunit C 1: G
ATPase H+-transporting V1 subunit D: H
V-type proton ATPase subunit E 1: IJK
V-type proton ATPase subunit F: L
V-type proton ATPase subunit G: MNO
V-type proton ATPase subunit S1: P
Type IV secretion protein Dot: QRS
V-type proton ATPase subunit H: T
Synaptophysin: U
V-type proton ATPase 116 kDa subunit a 1: V
ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a: W
V-type proton ATPase subunit: X
V-type proton ATPase subunit e 2: Y
Rnasek protein: Z
V-type proton ATPase 16 kDa proteolipid subunit: 012345678
Renin receptor: 9
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
a
W
b
X
d
Y
e
Z
f
0
g
1
h
2
i
3
j
4
k
5
l
6
m
7
n
8
o
9
p
Membrane
We predict this structure to be a membrane protein.

H(+)-transporting two-sector ATPase

Toggle Identical (ABC)

V-type proton ATPase subunit B, brain isoform

Toggle Identical (DEF)

V-type proton ATPase subunit C 1

ATPase H+-transporting V1 subunit D

V-type proton ATPase subunit E 1

V-type proton ATPase subunit F

V-type proton ATPase subunit G

Toggle Identical (MN)

V-type proton ATPase subunit S1

Type IV secretion protein Dot

V-type proton ATPase subunit H

Synaptophysin

V-type proton ATPase 116 kDa subunit a 1

ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a

V-type proton ATPase subunit

V-type proton ATPase subunit e 2

Rnasek protein

V-type proton ATPase 16 kDa proteolipid subunit

Toggle Identical (012345678)

Renin receptor

Related Entries With Identical Sequence

6vq6.1 | 6vq7.1 | 6vq8.1 | 6vq9.1 | 6vqa.1 | 6vqb.1 | 6vqc.1 | 6vqg.1 | 6vqh.1 | 6vqi.1 | 6vqj.1 | 6vqk.1 | 6wlz.1 | 6wm2.1 | 6wm3.1 | 6wm4.1 | 7u4t.1 | 7uzf.1 | 7uzg.1 | 7uzh.1 | 7uzi.1 | 7uzj.1 | 7uzk.1 | 9b8o.1 | 9b8p.1 | 9b8q.1 | 9bra.1 | 9brb.1 | 9brc.1 | 9brq.1  more...