SMTL ID : 9f8v.1 (2 other biounits)

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH7420

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 01: 2-azanyl-8-propyl-3,7-dihydropurine-6-thione

01.1: 18 residues within 4Å: Chain A: G.35, F.38, F.137, S.140, N.143, N.144, I.145, I.148, K.242, C.246, M.250, P.259, V.260, D.261, V.264, Q.308, A.309, F.312 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.137, A:I.145 Hydrogen bonds: A:G.35, A:K.242, A:Q.308 Salt bridges: A:D.261 pi-Stacking: A:F.312

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: H.269, H.275 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.269, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E. et al., Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH7420. To Be Published

Release Date

2025-05-21

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase

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