SMTL ID : 9hlf.1 (2 other biounits)

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH14445

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-(3,4-dichlorophenyl)pyridin-4-amine

01.1: 11 residues within 4Å: Chain A: S.34, G.35, F.137, N.143, I.145, K.242, M.250, P.259, Q.308, A.309, F.312 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.145, A:F.312 Hydrogen bonds: A:G.35 pi-Stacking: A:F.312

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: A.179, G.182, P.183, E.184 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.182, A:E.184 Water bridges: A:E.184

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.269, H.275 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.269, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kehler, M. et al., Organocatalytic Switches of DNA Glycosylase OGG1 Catalyze a Highly Efficient AP-Lyase Function. Chemistry (2025)

Release Date

2025-05-21

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase

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