SMTL ID : 9f8z.1 (2 other biounits)

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13677

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}4-(5-chloranyl-6-methoxy-pyridin-3-yl)-1~{H}-pyrazolo[3,4-d]pyrimidine-4,6-diamine

01.1: 19 residues within 4Å: Chain A: S.34, G.35, Q.36, F.38, L.125, F.137, S.140, I.145, I.148, K.242, C.246, L.249, M.250, P.259, D.261, G.305, Q.308, A.309, F.312 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.312 Hydrogen bonds: A:G.35, A:K.242, A:Q.308 Salt bridges: A:D.261 pi-Cation interactions: A:K.242

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: H.269, H.275 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.269, A:H.275

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: Y.226, H.230, D.245, K.290, G.293, R.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.245 Salt bridges: A:H.230, A:K.290, A:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E. et al., Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13677. To Be Published

Release Date

2025-05-21

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase

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