SMTL ID : 9fnu.1 (2 other biounits)

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13579

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 01: 3-(2-azanylethyl)-2-pyridin-3-yl-1~{H}-indol-5-ol

01.1: 14 residues within 4Å: Chain A: S.34, G.35, Q.36, F.137, S.140, N.143, I.148, K.242, M.250, D.261, V.264, Q.308, A.309, F.312 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.36, A:I.148, A:F.312 Hydrogen bonds: A:N.143, A:D.261, A:Q.308 pi-Stacking: A:F.312

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.226, E.227, H.230, D.245, K.290, R.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.245, A:R.297 Water bridges: A:Y.226

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.269, H.275 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.269, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E. et al., Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13579. To Be Published

Release Date

2025-06-25

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase

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