SMTL ID : 9g5s.1

Xylose Isomerase collected at 30C using serial fixed-target crystallography

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: E.181, E.217, D.245, D.287 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287, H2O.1 MG.2: 5 residues within 4Å: Chain A: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.217, A:H.220, A:D.255, A:D.255, A:D.257 MG.3: 4 residues within 4Å: Chain B: E.181, E.217, D.245, D.287 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287, H2O.14 MG.4: 5 residues within 4Å: Chain B: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.217, B:H.220, B:D.255, B:D.255, B:D.257 MG.5: 4 residues within 4Å: Chain C: E.181, E.217, D.245, D.287 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287, H2O.27 MG.6: 5 residues within 4Å: Chain C: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.217, C:H.220, C:D.255, C:D.255, C:D.257 MG.7: 4 residues within 4Å: Chain D: E.181, E.217, D.245, D.287 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287, H2O.39 MG.8: 5 residues within 4Å: Chain D: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.217, D:H.220, D:D.255, D:D.255, D:D.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schulz, E.C. et al., Probing the modulation of enzyme kinetics by multi-temperature, time-resolved serial crystallography. Nat Commun (2025)

Release Date

2025-07-30

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Xylose isomerase

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