SMTL ID : 9h7w.1

Hen Egg White Lysozyme in Complex with Imidizole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

2 x 01: 2H-imidazol-2-ol

01.1: 9 residues within 4Å: Chain A: K.51, F.52, E.53, S.54, N.55, N.62, R.132 Ligands: 01.2, EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.52, A:R.132 01.2: 5 residues within 4Å: Chain A: E.53, S.54, N.62, Q.75 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.62

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: R.23, A.140, W.141 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: V.20, S.54, N.55, N.57 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.57

6 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 8 residues within 4Å: Chain A: D.70, Q.75, I.76, N.77, W.81, I.116, A.125, W.126 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.77, A:W.81 Water bridges: A:L.74, A:Q.75, A:A.125 IMD.6: 5 residues within 4Å: Chain A: A.28, K.31, R.32, R.146, L.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.28, A:L.147, A:L.147 IMD.7: 8 residues within 4Å: Chain A: Q.139, I.142, R.143, G.144, C.145, R.146, L.147 Ligands: IMD.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.142, A:C.145 IMD.8: 4 residues within 4Å: Chain A: V.127, A.128, N.131, R.132 No protein-ligand interaction detected (PLIP) IMD.9: 6 residues within 4Å: Chain A: K.31, D.36, L.43, I.142, L.147 Ligands: IMD.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.36 IMD.10: 5 residues within 4Å: Chain A: Y.38, R.39, K.114, K.115, S.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.38, A:Y.38, A:K.115

2 x NA: SODIUM ION(Non-functional Binders)

NA.11: 8 residues within 4Å: Chain A: S.78, C.82, N.83, D.84, T.87, S.90, R.91, N.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.82, A:S.90 NA.12: 3 residues within 4Å: Chain A: N.64, D.70, V.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.64, A:D.70

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.13: 5 residues within 4Å: Chain A: N.83, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain A: S.42, G.44, V.138, Q.139, I.142 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: F.21, A.29, R.32, H.33, D.105, I.106 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: P.88, G.89, S.90 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bauer, J.A. et al., Lysozyme in complex with imidazole. To Be Published

Release Date

2025-11-05

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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