SMTL ID : 9i7c.2 (2 other biounits)

Crystal structure of wild-type HRP-2 PWWP domain - Crystal form P212121 type 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: M.16, Y.19, W.22, F.45, T.48, E.50 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:E.50 pi-Cation interactions: A:Y.19, A:W.22, A:W.22

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.76, G.77, F.78, N.79, E.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.77, A:N.79, A:E.80 Water bridges: A:F.78, A:F.78 SO4.3: 4 residues within 4Å: Chain A: K.15, K.17, G.18, Y.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.18 Salt bridges: A:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Crystal engineering of the hepatoma-derived growth factor-related protein 2 PWWP domain towards crystallographic fragment screening. Acta Crystallogr.,Sect.F (2025)

Release Date

2025-08-13

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatoma-derived growth factor-related protein 2

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