SMTL ID : 9p16.1

Thermolysin Room-Temperature In-Situ, Grown On-Site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166, S.169, H.231 Ligands: PO4.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 8 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, I.188, G.189, E.190 Ligands: CA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.138, A:E.177, A:D.185, A:E.190, H2O.2 CA.3: 7 residues within 4Å: Chain A: E.177, K.182, N.183, P.184, D.185, E.190 Ligands: CA.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.3, H2O.4 CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, A:D.200, H2O.2 CA.5: 4 residues within 4Å: Chain A: D.57, D.59, Q.61, F.62 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.59, A:Q.61, H2O.2, H2O.4, H2O.8

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 10 residues within 4Å: Chain A: N.112, A.113, F.114, H.142, E.143, H.146, Y.157, E.166, H.231 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.146 Water bridges: A:N.112, A:A.113, A:A.113, A:E.143, A:R.203, A:R.203 Salt bridges: A:H.142, A:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campomizzi, C.S. et al., Does crossing the pond affect crystal quality?. Biorxiv (2025)

Release Date

2025-08-27

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

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