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Papain-like protease nsp3 | P0DTD1 PRO_0000449621
Created: May 5, 2023 at 21:33
Template Results
Coverage | GMQE | QSQE | Identity | Method | Oligo State | Ligands | |
---|---|---|---|---|---|---|---|
6wuu.4.A
Non-structural protein 3 Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR250 | |||||||
0.15 | - | 99.69 | X-ray, 2.8Å | monomer ✓ | 1 x ACE-UB4-DPP-GLY-GVE, 1 x ZN, 2 x MG | ||
6wuu.1.A
Non-structural protein 3 Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR250 | |||||||
0.15 | - | 99.69 | X-ray, 2.8Å | monomer ✓ | 1 x ACE-UB4-DPP-GLY-GVE, 1 x ZN | ||
✓ | 6wuu.2.A
Non-structural protein 3 Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR250 | ||||||
0.15 | - | 99.69 | X-ray, 2.8Å | monomer ✓ | 1 x ACE-UB4-DPP-GLY-GVE, 1 x ZN, 1 x MG | ||
7cmd.2.A
Non-structural protein 3 Crystal structure of the SARS-CoV-2 PLpro with GRL0617 | |||||||
0.15 | - | 100.00 | X-ray, 2.6Å | monomer ✓ | 4 x ZN, 1 x TTT | ||
✓ | 6w9c.1.A
Non-structural protein 3 The crystal structure of papain-like protease of SARS CoV-2 | ||||||
0.15 | 0.26 | 100.00 | X-ray, 2.7Å | homo-trimer ⚠ | 4 x ZN | ||
8eua.1.A
Papain-like protease nsp3 Structure of SARS-CoV2 PLpro bound to a covalent inhibitor | |||||||
0.15 | - | 99.69 | X-ray, 3.1Å | monomer ✓ | 1 x WUK, 3 x ZN | ||
✓ | 7cmd.4.A
Non-structural protein 3 Crystal structure of the SARS-CoV-2 PLpro with GRL0617 | ||||||
0.15 | - | 100.00 | X-ray, 2.6Å | monomer ✓ | 1 x TTT, 2 x ZN | ||
7cmd.1.A
Non-structural protein 3 Crystal structure of the SARS-CoV-2 PLpro with GRL0617 | |||||||
0.15 | - | 100.00 | X-ray, 2.6Å | monomer ✓ | 1 x TTT, 2 x ZN | ||
7cmd.3.A
Non-structural protein 3 Crystal structure of the SARS-CoV-2 PLpro with GRL0617 | |||||||
0.14 | - | 100.00 | X-ray, 2.6Å | monomer ✓ | 1 x TTT, 1 x ZN | ||
5e6j.1.A
Replicase polyprotein 1ab Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe | |||||||
0.14 | - | 82.91 | X-ray, 2.8Å | hetero-trimer ⚠ | 1 x NI | ||
7lfu.1.A
papain-like protease Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR250 | |||||||
0.14 | - | 82.91 | X-ray, 2.3Å | monomer ✓ | 1 x ACE-UB4-DPP-GLY-GVE | ||
✓ | 3e9s.1.A
Non-structural protein 3 A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication | ||||||
0.14 | - | 82.86 | X-ray, 2.5Å | monomer ✓ | 1 x TTT, 1 x ZN | ||
✓ | 3e9s.1.A
Non-structural protein 3 A new class of papain-like protease/deubiquitinase inhibitors blocks SARS virus replication | ||||||
0.14 | - | 82.86 | X-ray, 2.5Å | monomer ✓ | 1 x TTT, 1 x ZN | ||
7lfv.2.A
papain-like protease Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR251 | |||||||
0.14 | - | 82.91 | X-ray, 2.2Å | monomer ✓ | 1 x ACY-73O-DPP-GLY-GVE, 1 x ZN | ||
5e6j.2.A
Replicase polyprotein 1ab Structure of SARS PLpro bound to a Lys48-linked di-ubiquitin activity based probe | |||||||
0.14 | - | 82.91 | X-ray, 2.8Å | hetero-trimer ⚠ | None | ||
7lfv.1.A
papain-like protease Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR251 | |||||||
0.13 | - | 82.91 | X-ray, 2.2Å | monomer ✓ | 1 x ACY-73O-DPP-GLY-GVE, 1 x ZN | ||
3mj5.1.A
Replicase polyprotein 1a Severe Acute Respiratory Syndrome-Coronavirus Papain-Like Protease Inhibitors: Design, Synthesis, Protein-Ligand X-ray Structure and Biological Evaluation | |||||||
0.13 | - | 82.86 | X-ray, 2.6Å | monomer ✓ | 1 x GRM, 1 x ZN | ||
8f2e.1.A
Papain-like protease nsp3 Crystal Structure of the CoV-Y domain of SARS-CoV-2 Nonstructural Protein 3 | |||||||
0.12 | - | 100.00 | X-ray, 2.4Å | monomer ✓ | None | ||
4m0w.1.A
Replicase polyprotein 1a Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin | |||||||
0.11 | - | 82.39 | X-ray, 1.4Å | hetero-dimer ⚠ | 1 x ZN, 2 x NHE | ||
✓ | 2w2g.1.A
NON-STRUCTURAL PROTEIN 3 HUMAN SARS CORONAVIRUS UNIQUE DOMAIN | ||||||
0.08 | 0.21 | 75.00 | X-ray, 2.2Å | homo-dimer ⚠ | None | ||
2wct.1.A
NON-STRUCTURAL PROTEIN 3 human SARS coronavirus unique domain (triclinic form) | |||||||
0.08 | 0.19 | 75.00 | X-ray, 2.8Å | homo-dimer ⚠ | None | ||
2w2g.1.A
NON-STRUCTURAL PROTEIN 3 HUMAN SARS CORONAVIRUS UNIQUE DOMAIN | |||||||
0.08 | 0.21 | 74.90 | X-ray, 2.2Å | homo-dimer ⚠ | None | ||
2wct.1.A
NON-STRUCTURAL PROTEIN 3 human SARS coronavirus unique domain (triclinic form) | |||||||
0.08 | 0.19 | 74.90 | X-ray, 2.8Å | homo-dimer ⚠ | None | ||
2w2g.1.B
NON-STRUCTURAL PROTEIN 3 HUMAN SARS CORONAVIRUS UNIQUE DOMAIN | |||||||
0.08 | 0.21 | 75.00 | X-ray, 2.2Å | homo-dimer ⚠ | None | ||
2w2g.1.B
NON-STRUCTURAL PROTEIN 3 HUMAN SARS CORONAVIRUS UNIQUE DOMAIN | |||||||
0.08 | 0.20 | 74.90 | X-ray, 2.2Å | homo-dimer ⚠ | None | ||
6ywk.4.A
NSP3 macrodomain Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with HEPES | |||||||
0.06 | - | 100.00 | X-ray, 2.2Å | monomer ✓ | None | ||
6z5t.1.A
Replicase polyprotein 1ab SARS-CoV-2 Macrodomain in complex with ADP-ribose | |||||||
0.06 | - | 100.00 | X-ray, 1.6Å | monomer ✓ | 1 x APR | ||
✓ | 6ywk.3.A
NSP3 macrodomain Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with HEPES | ||||||
0.06 | - | 100.00 | X-ray, 2.2Å | monomer ✓ | 1 x MG | ||
2acf.4.A
Replicase polyprotein 1ab NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS | |||||||
0.06 | - | 72.94 | X-ray, 1.4Å | monomer ✓ | None | ||
2acf.4.A
Replicase polyprotein 1ab NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS | |||||||
0.06 | - | 73.37 | X-ray, 1.4Å | monomer ✓ | None | ||
6ywk.1.A
NSP3 macrodomain Crystal structure of SARS-CoV-2 (Covid-19) NSP3 macrodomain in complex with HEPES | |||||||
0.06 | - | 100.00 | X-ray, 2.2Å | monomer ✓ | None | ||
7jme.1.A
Non-structural protein 3 Structure of the SARS-CoV-2 NSP3 Macro X domain in complex with cyclic AMP | |||||||
0.06 | - | 100.00 | X-ray, 1.5Å | monomer ✓ | 1 x CMP | ||
7c33.1.A
Non-structural protein 3 Macro domain of SARS-CoV-2 in complex with ADP-ribose | |||||||
0.06 | - | 100.00 | X-ray, 3.8Å | monomer ✓ | 1 x APR | ||
2acf.2.A
Replicase polyprotein 1ab NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS | |||||||
0.06 | - | 72.94 | X-ray, 1.4Å | monomer ✓ | None | ||
6wey.1.A
Non-structural protein 3 High-resolution structure of the SARS-CoV-2 NSP3 Macro X domain | |||||||
0.06 | - | 100.00 | X-ray, 1.0Å | monomer ✓ | None | ||
2acf.2.A
Replicase polyprotein 1ab NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS | |||||||
0.06 | - | 73.37 | X-ray, 1.4Å | monomer ✓ | None | ||
6woj.1.A
Non-structural protein 3 Structure of the SARS-CoV-2 macrodomain (NSP3) in complex with ADP-ribose | |||||||
0.06 | - | 100.00 | X-ray, 2.2Å | monomer ✓ | 1 x APR | ||
2fav.2.A
Replicase polyprotein 1ab (pp1ab) (ORF1AB) Crystal structure of SARS macro domain in complex with ADP-ribose at 1.8 A resolution | |||||||
0.06 | - | 73.81 | X-ray, 1.8Å | monomer ✓ | 1 x APR | ||
2fav.1.A
Replicase polyprotein 1ab (pp1ab) (ORF1AB) Crystal structure of SARS macro domain in complex with ADP-ribose at 1.8 A resolution | |||||||
0.06 | - | 73.81 | X-ray, 1.8Å | monomer ✓ | None | ||
2acf.1.A
Replicase polyprotein 1ab NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS | |||||||
0.05 | - | 73.37 | X-ray, 1.4Å | monomer ✓ | None | ||
2acf.1.A
Replicase polyprotein 1ab NMR STRUCTURE OF SARS-COV NON-STRUCTURAL PROTEIN NSP3A (SARS1) FROM SARS CORONAVIRUS | |||||||
0.05 | - | 72.94 | X-ray, 1.4Å | monomer ✓ | None | ||
7xc4.1.B
Papain-like protease nsp3 Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) in complex with Oxaprozin | |||||||
0.05 | 0.24 | 100.00 | X-ray, 2.1Å | homo-dimer ⚠ | 2 x BJ6 | ||
7xc3.1.B
Papain-like protease nsp3 Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) | |||||||
0.05 | 0.25 | 100.00 | X-ray, 1.7Å | homo-dimer ⚠ | None | ||
7xc4.1.A
Papain-like protease nsp3 Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) in complex with Oxaprozin | |||||||
0.04 | 0.25 | 100.00 | X-ray, 2.1Å | homo-dimer ⚠ | 2 x BJ6 | ||
7xc4.1.A
Papain-like protease nsp3 Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) in complex with Oxaprozin | |||||||
0.04 | 0.24 | 100.00 | X-ray, 2.1Å | homo-dimer ⚠ | 2 x BJ6 | ||
7xc3.1.A
Papain-like protease nsp3 Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) | |||||||
0.04 | 0.25 | 100.00 | X-ray, 1.7Å | homo-dimer ⚠ | None | ||
✓ | 2kqv.1.A
Non-structural protein 3 SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. I: Structure of the SUD-M domain of SUD-MC | ||||||
0.04 | - | 78.13 | NMR | monomer ✓ | None | ||
7lgo.2.A
Non-structural protein 3 Crystal structure of the nucleic acid binding domain (NAB) of Nsp3 from SARS-CoV-2 | |||||||
0.04 | - | 100.00 | X-ray, 2.5Å | monomer ✓ | None | ||
7lgo.2.A
Non-structural protein 3 Crystal structure of the nucleic acid binding domain (NAB) of Nsp3 from SARS-CoV-2 | |||||||
0.04 | - | 100.00 | X-ray, 2.5Å | monomer ✓ | None | ||
7lgo.1.A
Non-structural protein 3 Crystal structure of the nucleic acid binding domain (NAB) of Nsp3 from SARS-CoV-2 | |||||||
0.03 | - | 100.00 | X-ray, 2.5Å | monomer ✓ | None | ||
7lgo.1.A
Non-structural protein 3 Crystal structure of the nucleic acid binding domain (NAB) of Nsp3 from SARS-CoV-2 | |||||||
0.03 | - | 100.00 | X-ray, 2.5Å | monomer ✓ | None | ||
✓ | 2k87.1.A
Non-structural protein 3 of Replicase polyprotein 1a NMR STRUCTURE OF A PUTATIVE RNA BINDING PROTEIN (SARS1) FROM SARS CORONAVIRUS | ||||||
0.03 | - | 81.74 | NMR | monomer ✓ | None | ||
2kqw.1.A
Non-structural protein 3 SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. II: Structure of the SUD-C domain of SUD-MC | |||||||
0.02 | - | 78.13 | NMR | monomer ✓ | None | ||
✓ | 2kqw.1.A
Non-structural protein 3 SARS coronavirus-unique domain (SUD): Three-domain molecular architecture in solution and RNA binding. II: Structure of the SUD-C domain of SUD-MC | ||||||
0.02 | - | 80.22 | NMR | monomer ✓ | None | ||
The full list of templates matching your target sequence includes the following templates which are not in the list above. The full template list is available in text or html format.
1hjz.2.A, 1njr.1.A, 1qmy.1.A, 1qol.3.A, 1qol.3.B, 1spv.1.A, 1txz.1.A, 1vhu.1.A, 1yd9.1.A, 1yd9.3.A, 1yd9.4.A, 1zr3.1.A, 1zr3.2.A, 1zr5.1.A, 2acf.1.A, 2acf.2.A, 2acf.4.A, 2afc.1.A, 2dx6.1.A, 2eee.1.A, 2fav.1.A, 2fav.2.A, 2fav.3.A, 2fe8.1.A, 2fe8.2.A, 2fe8.3.A, 2fg1.1.A, 2fxk.2.A, 2gri.1.A, 2jqf.1.A, 2jqf.1.B, 2jqg.1.A, 2jzd.1.A, 2jzf.1.A, 2k87.1.A, 2kaf.1.A, 2kqv.1.A, 2kqw.1.A, 2l8r.1.A, 2lgr.1.A, 2m0a.1.A, 2vri.1.A, 2w2g.1.A, 2w2g.1.B, 2wct.1.A, 2x47.1.A, 2xd7.1.A, 3e9s.1.A, 3ejf.1.A, 3ejg.1.A, 3eke.1.A, 3eti.1.A, 3ew5.1.A, 3ew5.2.A, 3ewo.1.A, 3ewo.1.B, 3ewr.1.A, 3gpo.1.A, 3gpq.4.A, 3gqe.1.A, 3gqe.2.A, 3gqo.3.A, 3gqo.4.A, 3iid.1.A, 3iif.1.A, 3iif.2.A, 3iif.3.A, 3j8h.1.A, 3jzt.1.A, 3mj5.1.A, 3mp2.1.A, 3q6z.1.A, 3q71.1.A, 3sih.1.A, 3sij.1.A, 3v2b.1.A, 3v45.1.A, 3vfq.1.A, 4abk.1.A, 4ess.1.A, 4etj.1.A, 4etk.1.A, 4etk.2.A, 4gua.1.A, 4gvv.1.A, 4gvv.2.A, 4gvv.3.A, 4gvw.1.A, 4iqy.1.A, 4j4z.1.A, 4j5q.1.A, 4j5r.1.A, 4j5s.1.A, 4jca.2.A, 4jgk.1.A, 4jgk.3.A, 4jll.1.A, 4jvv.1.A, 4k0c.1.A, 4k0c.2.A, 4kyb.1.A, 4kyb.2.A, 4m0w.1.A, 4mm3.1.B, 4ovz.1.A, 4ovz.2.A, 4ow0.1.A, 4p16.1.A, 4pt5.1.A, 4r3d.1.A, 4rez.1.A, 4rf0.1.A, 4rna.1.A, 4tu0.3.A, 4uml.1.A, 4wur.1.A, 4x2z.1.A, 4ypt.1.A, 5ail.1.A, 5bz0.1.A, 5cb3.1.A, 5cb5.1.A, 5cms.1.A, 5dus.1.A, 5e3b.1.A, 5e6j.1.A, 5e6j.2.A, 5fsu.1.A, 5fsu.2.A, 5fsz.1.A, 5fud.1.A, 5gky.1.E, 5gkz.1.G, 5gl0.1.A, 5gl1.1.A, 5hih.1.A, 5iit.1.A, 5iq5.1.A, 5isn.1.A, 5j8v.1.D, 5kiv.1.A, 5ko3.1.A, 5l9k.1.A, 5lau.1.A, 5lbp.1.A, 5lcc.1.A, 5lcc.2.A, 5lnc.1.A, 5lnc.2.A, 5lw0.1.A, 5lw6.1.A, 5m31.1.A, 5m3e.1.A, 5m3i.1.A, 5mqx.1.A, 5o2d.1.A, 5rs7.1.A, 5rs7.2.A, 5rs8.1.A, 5rs8.2.A, 5rs9.1.A, 5rs9.2.A, 5rsb.1.A, 5rsb.2.A, 5rsc.1.A, 5rsc.2.A, 5rsd.1.A, 5rsd.2.A, 5rse.1.A, 5rse.2.A, 5rsf.1.A, 5rsf.2.A, 5rsg.1.A, 5rsg.2.A, 5rsh.1.A, 5rsh.2.A, 5rsi.1.A, 5rsi.2.A, 5rsj.1.A, 5rsj.2.A, 5rsk.1.A, 5rsk.2.A, 5rsl.1.A, 5rsl.2.A, 5rsm.1.A, 5rsm.2.A, 5rsn.1.A, 5rsn.2.A, 5rso.1.A, 5rso.2.A, 5rsp.1.A, 5rsp.2.A, 5rsq.1.A, 5rsq.2.A, 5rsr.1.A, 5rsr.2.A, 5rss.1.A, 5rss.2.A, 5rst.1.A, 5rst.2.A, 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