A0A037Y4V1 (A0A037Y4V1_ECOLX) Escherichia coli

Alkylated DNA repair protein AlkB UniProtKBInterProInteractive Modelling

216 aa; Sequence (Fasta) ; 3 identical sequences: Escherichia coli: P05050; Escherichia coli H386: A0A1X3JEY1; Shigella sonnei: A0AAE5N6R7

Available Structures

37 Experimental Structures

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
Crystal Structure of Escherichia coli AlkB in complex with ssDNA containing a 1-methylguanine lesionhomo-2-mer9-216
99.52CO;AKG;
Crystal Structure of AlkB in complex with Fe(II) and succinatemonomer13-216
100FE2;SIN;
Crystal Structure of AlkB in complex with Mn(II) and 2-oxoglutaratemonomer13-215
100AKG;MN;
Crystal structure of AlkB protein with cofactors bound to dsDNA containing m6Amonomer12-214
99.51MN;AKG;
Crystal structure of AlkB D135I mutant protein with cofactors bound to dsDNA containing m6A/Amonomer12-214
99.0MN;AKG;
Crystal structure of Escherichia coli AlkB with Co(II) and 2-OGmonomer12-214
100CO;AKG;
Crystal structure of AlkB in complex with manganese and N-(4-((6-((carboxymethyl)carbamoyl)-5-hydro…monomer14-215
100UPW;MN;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
99.5FE;SIN;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
99.5MN;AKG;GOL;
Crystal structure of AlkB D135I/E136H mutant protein with cofactors bound to dsDNA containing m6A/Amonomer13-214
98.52MN;AKG;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
99.5FE;SIN;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
99.5FE;SIN;
X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGmonomer13-214
99.5MN;AKG;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
99.5MN;AKG;GOL;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer14-215
99.5FE;SIN;
Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)monomer14-214
1008XQ;MN;ACT;DMS;
Crystal Structure of AlkB T208A mutant protein in complex with Co(II), 2-oxoglutarate, and methylat…monomer15-215
99.5CO;AKG;
Crystal structure of AlkB E136L mutant protein with cofactors bound to dsDNA containing m6A/Amonomer14-214
99.0MN;AKG;GOL;
Complex structure of AlkB/rheinmonomer14-214
100RHN;MN;
Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(3-nitrobenzyl)-L-cysteinemonomer14-214
100FE;EPE;MD5;
X-ray structure of E coli AlkB crosslinked to dsDNA in the active sitemonomer14-214
99.5MN;AKG;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer14-214
99.5MN;AKG;
Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe, AKG and methylated DNA under ana…monomer15-215
100AKG;FE;O5W;
X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsmonomer13-213
99.5MN;AKG;
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer14-214
99.5AKG;MN;
Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC…monomer15-214
100AKG;MN;
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC…monomer15-214
100AKG;FE2;
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
100FE2;AKG;SIN;
Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
100CO;AKG;
Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
100MN;AKG;
Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-Tmonomer15-214
100FE2;SIN;
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
100FE2;AKG;
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA…monomer15-213
100AKG;FE2;
Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteinemonomer15-213
100FE;MD3;GOL;
Crystal structure of AlkB in complex with Fe(III) and 2-(3-hydroxypicolinomido)acetic acidmonomer16-214
100FE;MD6;
Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe and AKG after oxygen exposure usi…monomer15-213
100FE;AKG;
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer16-214
100FE2;AKG;SIN;

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
3khc.1.Bmonomer0.939-215
DT;CO;AKG;99.54