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A0A037Y4V1 (A0A037Y4V1_ECOLX) Escherichia coli

DNA oxidative demethylase AlkB UniProtKBInterProInteractive Modelling

216 aa; Sequence (Fasta) ; 2 identical sequences: Escherichia coli: P05050; Escherichia coli H386: A0A1X3JEY1

Available Structures

37 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal Structure of Escherichia coli AlkB in complex with ssDNA containing a 1-methylguanine lesionhomo-2-mer9-216
CO;AKG;
Assess
Crystal Structure of AlkB in complex with Fe(II) and succinatemonomer13-216
FE2;SIN;
Assess
Crystal Structure of AlkB in complex with Mn(II) and 2-oxoglutaratemonomer13-215
AKG;MN;
Assess
Crystal structure of AlkB protein with cofactors bound to dsDNA containing m6Amonomer12-214
MN;AKG;
Assess
Crystal structure of AlkB D135I mutant protein with cofactors bound to dsDNA containing m6A/Amonomer12-214
MN;AKG;
Assess
Crystal structure of Escherichia coli AlkB with Co(II) and 2-OGmonomer12-214
CO;AKG;
Assess
Crystal structure of AlkB in complex with manganese and N-(4-((6-((carboxymethyl)carbamoyl)-5-hydro…monomer14-215
UPW;MN;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
FE;SIN;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
MN;AKG;GOL;
Assess
Crystal structure of AlkB D135I/E136H mutant protein with cofactors bound to dsDNA containing m6A/Amonomer13-214
MN;AKG;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
FE;SIN;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
FE;SIN;
Assess
X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KGmonomer13-214
MN;AKG;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer13-214
MN;AKG;GOL;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer14-215
FE;SIN;
Assess
Crystal Structure of AlkB in complex with 5-carboxy-8-hydroxyquinoline (IOX1)monomer14-214
8XQ;MN;ACT;DMS;
Assess
Crystal Structure of AlkB T208A mutant protein in complex with Co(II), 2-oxoglutarate, and methylat…monomer15-215
CO;AKG;
Assess
Crystal structure of AlkB E136L mutant protein with cofactors bound to dsDNA containing m6A/Amonomer14-214
MN;AKG;GOL;
Assess
Complex structure of AlkB/rheinmonomer14-214
RHN;MN;
Assess
Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(3-nitrobenzyl)-L-cysteinemonomer14-214
FE;EPE;MD5;
Assess
X-ray structure of E coli AlkB crosslinked to dsDNA in the active sitemonomer14-214
MN;AKG;
Assess
Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe, AKG and methylated DNA under ana…monomer15-215
AKG;FE;O5W;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer14-214
MN;AKG;
Assess
X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactorsmonomer13-213
MN;AKG;
Assess
Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenasemonomer14-214
AKG;MN;
Assess
Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC…monomer15-214
AKG;MN;
Assess
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC…monomer15-214
AKG;FE2;
Assess
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
FE2;AKG;SIN;
Assess
Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
MN;AKG;
Assess
Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
CO;AKG;
Assess
Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-Tmonomer15-214
FE2;SIN;
Assess
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer15-214
FE2;AKG;
Assess
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA…monomer15-213
AKG;FE2;
Assess
Crystal Structure of AlkB in complex with Fe(III) and N-Oxalyl-S-(2-napthalenemethyl)-L-cysteinemonomer15-213
FE;MD3;GOL;
Assess
Crystal structure of AlkB in complex with Fe(III) and 2-(3-hydroxypicolinomido)acetic acidmonomer16-214
FE;MD6;
Assess
Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe and AKG after oxygen exposure usi…monomer15-213
FE;AKG;
Assess
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-me…monomer16-214
FE2;AKG;SIN;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
3khc.1.Bmonomer0.939-215
DT;CO;AKG;99.54
Assess