A0A0L8VW06 | SWISS-MODEL Repository

A0A0L8VW06 (A0A0L8VW06_9SACH) Saccharomyces boulardii (nom inval)

RPB3p RNA polymerase II third largest subunit B44 UniProtKB InterPro Interactive Modelling

318 aa; Sequence (Fasta) ; 9 identical sequences: Saccharomyces cerevisiae: N1P1P4, G2WGC3, C8ZAM7, C7GPW9, P16370, B5VKS0, A6ZVP6, B3LTM9; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GI05

It is possible new templates exist for this target since these models were created.

Available Structures

195 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Backtracked RNA polymerase II complex with 13mer RNA	3gtj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-272	100	8×ZN; 1×MG;
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Backtracked RNA polymerase II complex with 12mer RNA	3gtg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-272	100	8×ZN; 1×MG;
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Backtracked RNA polymerase II complex with 18mer RNA	3gtk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-272	100	8×ZN;
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Mediator-PIC Early (Core B)	7uif PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34087; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278;	1-271	100
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Core Mediator-PICearly (Copy A)	7ui9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P33308; P34087; P34162; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q06213; Q08278; Q12321; Q12343; Q99278;	1-271	100
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8-oxoguanine containing RNA polymerase II elongation complex D	3i4m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	1-270	100	1×MG; 8×ZN;
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8-oxoguanine containing RNA polymerase II elongation complex E	3i4n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	1-270	100	1×MG; 8×ZN;
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RNA polymerase II elongation complex arrested at a CPD lesion	6o6c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	1-270	100	8×ZN; 1×MG;
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RNA pol II elongation complex	5vvs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	1-270	100	8×ZN; 1×MG;
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Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1…	8tvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36053; P38902; P40352; P40422;	1-270	100	8×ZN; 1×MG;
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Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 2 (Pol II Rat1-P…	8k5p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P34087; P38902; P40422; P53063; Q02792;	1-270	100	8×ZN; 3×MG;
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Ternary complex of RNA Pol II, transcription scaffold and Rad26	5vvr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40352; P40422;	1-270	100	8×ZN; 1×MG;
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Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 1 (Pol II Rat1-P…	8jch PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P34087; P38902; P40422; P53063; Q02792;	1-270	100	8×ZN; 3×MG;
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RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1	7rim PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×5N0; 8×ZN; 1×MG;
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RNA polymerase II elongation complex scaffold 1 without polyamide	7riq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 8×ZN;
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RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3	6upz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG; 1×PPV;
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RNA polymerase II elongation complex scaffold 2, without polyamide	7riw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 8×ZN;
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RNA polymerase II elongation complex with dG in state 1	6uq2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 soaked with CTP	7rip PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 1×5N0; 8×ZN; 1×PPV;
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RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP	2nvt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×G2P; 8×ZN; 2×MG;
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RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2	7rix PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 1×5N0; 8×ZN;
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RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1	6upx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E	6upy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG; 1×APC;
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RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry	8uks PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	2×MG; 8×ZN; 1×CTP;
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RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 5	6uq3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 8×ZN; 1×PPV;
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RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP	2e2j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×G2P; 8×ZN; 2×MG;
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RNA polymerase II elongation complex with Fapy-dG lesion in apo state	8ukq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4	6uq0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with Fapy-dG lesion with AMP added	8ukt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 8×ZN; 1×POP;
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RNA polymerase II elongation complex with unnatural base dTPT3	7ked PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 6	6uq1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with Fapy-dG lesion with CMP added	8uku PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG; 1×POP;
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RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP	7riy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	1×MG; 1×5N0; 8×ZN;
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RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry	8ukr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	2-268	100	8×ZN; 1×MG; 1×ATP;
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Elongation complex of RNA polymerase II with artificial RdRP scaffold	2r92 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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CPD lesion containing RNA Polymerase II elongation complex C	2ja7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	2-268	100	1×MG; 8×ZN;
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CPD lesion containing RNA Polymerase II elongation complex D	2ja8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	2-268	100	1×MG; 8×ZN;
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CPD lesion containing RNA Polymerase II elongation complex A	2ja5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	2-268	100	1×MG; 8×ZN;
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12-Subunit RNA Polymerase II Refined with Zn-SAD data	3fki PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-269	100	8×ZN; 1×MG;
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Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop	2r93 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	2-268	100	8×ZN; 1×MG;
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CPD lesion containing RNA Polymerase II elongation complex B	2ja6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	2-268	100	1×MG; 8×ZN;
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RNA polymerase II complexed with UTP at 2.3 A resolution	1twf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MN; 1×UTP;
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RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION	1i50 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MN;
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Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin	1k83 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P85421;	3-268	100	8×ZN; 1×MN;
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RNA Polymerase II Initiation Complex with a 6-nt RNA	3s14 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP	2nvq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	1×DUT; 8×ZN; 2×MG;
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Pol II elongation complex with an abasic lesion at i-1 position,soaking UMPNPP	6bm4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×2KH;
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RNA polymerase II complexed with GTP	1twc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MN; 1×GTP;
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RNA Polymerase II Initiation Complex with a 4-nt RNA	3rzo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN;
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RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 2)	3s1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION	1i3q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 1)	3s1m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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elongating RNA Polymerase II-Bye1 TLD complex	4by7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;	3-268	100	8×ZN; 1×MG; 2×EPE;
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RNA polymerase II elongation complex C	3m3y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×C7P;
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Complete RNA polymerase II elongation complex I with a T-U mismatch	3hou PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN;
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RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with GTP	3s1r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×GTP;
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RNA Polymerase II Initiation Complex with a 9-nt RNA	3s17 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA polymerase II complexed with ATP	1twa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	2×MN; 8×ZN; 1×ATP;
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RNA Polymerase II Initiation Complex with a 5-nt RNA containing a 5Br-U	3s2d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Pol II elongation complex with an abasic lesion at i+1 position, soaking AMPCPP	6blp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×APC;
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RNA Polymerase II Initiation Complex with an 8-nt RNA	3s16 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Arrested RNA polymerase II-Bye1 complex	4bxx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA polymerase II complexed with CTP	1twg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	2×MN; 8×ZN; 1×CTP;
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RNA Polymerase II Initiation Complex with a 7-nt RNA	3s15 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG;
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Arrested RNA Polymerase II reactivation intermediate	3po3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	9×ZN; 1×MG; 2×ACT; 1×EPE; 1×PGE;
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RNA Polymerase II Initiation Complex with a 6-nt RNA containing a 2[prime]-iodo ATP	3s2h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Arrested RNA Polymerase II elongation complex	3po2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×ACT; 1×EPE; 1×PEG;
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RNA Polymerase II Initiation Complex with a 5-nt RNA	3rzd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription …	4y7n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×G2P;
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RNA POLYMERASE II ELONGATION COMPLEX	1i6h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	1×MG; 8×ZN;
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RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with ATP	3s1q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	2×MG; 8×ZN; 1×ATP;
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Pol II elongation complex with 'dT-AP' at i+1, i-1 position	6bqf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Backtracked RNA polymerase II complex with 13mer with G<>U mismatch	3gtl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP	4a3e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×APC;
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Structure of RNA polymerase II-TFIIB complex	4bbr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;	3-268	100	9×ZN; 2×MG;
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Complete RNA polymerase II elongation complex VI	3hoy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Alpha-amanitin inhibited complete RNA polymerase II elongation complex	2vum PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P85421;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II form II in 150 mM Mn+2	2nvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MN;
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RNA polymerase II complexed with 2'dATP	1twh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	2×MN; 8×ZN; 1×ATP;
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RNA polymerase II elongation complex in 150 mm MG+2 with UTP	2yu9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×UTP;
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RNA Polymerase II elongation complex containing a CPD Lesion	4a93 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid	4a3d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Pol II - High Mn(+2) concentration	9bvt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 2×MN; 1×GOL;
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Pol II elongation complex with an abasic lesion at i+1 position	6blo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Pol II elongation complex with an abasic lesion at i-1 position	6bm2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Pol II elongation complex with an N6-methyladenine-containing template and a matched UMPNPP	5w51 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×2KH;
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RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP	2e2i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×DGT;
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RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site	7kee PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×WCG;
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RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid	4a3b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Complete RNA polymerase II elongation complex II	3hov PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP	4a3f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	1×APC; 8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP	4a3l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×APC;
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RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid	4a3g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Crystal structure of 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elonga…	4y52 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid	4a3k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid	4a3c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE	1r9t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×ATP;
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RNA Polymerase II - No ATP	9bw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN;
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Structure of RNA Polymerase II-Tfg1 peptide complex	5ip7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895;	3-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex B	3m4o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×C7P;
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Structure of an initially transcribing RNA polymerase II-TFIIB complex	4bbs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;	3-268	100	9×ZN; 2×MG;
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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP	4by1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×APC;
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Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine	3how PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP	2nvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×DUT;
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Pol II elongation complex with an N6-methyladenine-containing template	5w4u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX	1sfo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Complete RNA polymerase II elongation complex V	3hox PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine	3hoz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP	4a3j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×G2P;
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Cisplatin lesion containing RNA polymerase II elongation complex	2r7z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	1×CPT; 8×ZN; 1×MG;
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Backtracked RNA polymerase II complex induced by damage	3gtq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN;
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Co-complex of Backtracked RNA polymerase II with TFIIS	3gtm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	1×MG; 9×ZN;
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RNA polymerase II-TFIIS complex	1pqv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	1×MG; 9×ZN;
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Crystal Structure of an RNA polymerase II-TFIIB complex	3k7a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P38902; P40422;	3-268	100	9×ZN;
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Refined RNA Polymerase II-TFIIS complex	1y1v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	9×ZN; 1×MG;
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Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom	1wcm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II binary complex with DNA	4a3i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Complete RNA Polymerase II-RNA inhibitor complex	2b63 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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12 Subunit RNA Polymerase II at Room Temperature collected using SFX	5u5q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state	7kef PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×WC4;
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Structure of RNA Polymerase II-TFIIF complex	5ip9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895;	3-268	100	8×ZN; 1×MG;
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Backtracked RNA polymerase II complex with 24mer RNA	3gtp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP	4a3m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	1×APC; 8×ZN; 1×MG;
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RNA polymerase II elongation complex at 5 mM Mg2+ with GTP	2e2h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	1×GTP; 8×ZN; 2×MG;
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Crystal structure of yeast RNA polymerase II encountering oxidative Cyclopurine DNA lesions	4x6a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN;
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Backtracked RNA polymerase II complex with 15mer RNA	3gto PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Yeast RNAP II containing poly(A)-signal sequence in the active site	3h3v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Complete RNA Polymerase II elongation complex	1y1w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA Polymerase II-TFIIS-DNA/RNA complex	1y1y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P07273; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100
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Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesion…	4x67 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN;
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Wild Type RNA Polymerase II	1nik PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	7×ZN;
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12-subunit RNA Polymerase II	2b8k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN;
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Complete 12-subunit RNA polymerase II	1nt9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100
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RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE	1r9s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	2×MG; 1×UTP; 8×ZN;
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Crystal structure of RNA Polymerase II in complex with TFIIB	3k1f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;	3-268	100	9×ZN;
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RNA Polymerase II elongation complex with UTP, updated 11/2006	2nvz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 2×MG; 1×UTP;
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RNA polymerase II variant containing A Chimeric RPB9-C11 subunit	3qt1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	7×ZN; 1×MG;
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Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP	1y77 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG; 1×G2P;
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RNA POLYMERASE II TFIIB COMPLEX	1r5u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	9×ZN; 1×MG;
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RNA Polymerase II-Bye1 complex	4bxz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Structure of transcribing RNA polymerase II-nucleosome complex	6i84 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P62799; P84233;	3-268	100	8×ZN; 1×MG;
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Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module	3j1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100
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Cryo-EM structure of backtracked Pol II	8tvv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Cryo-EM structure of CPD-stalled Pol II (Conformation 2)	8tvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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RNA polymerase II initially transcribing complex (ITC)	7ml4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	3-268	100	15×ZN; 1×MG; 1×SF4;
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Mediator-RNA Polymerase II Pre-Initiation Complex	5sva PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34087; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278;	3-268	100	8×ZN; 1×MG;
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Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state)	8tug PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly	3j0k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902;	3-268	100	1×MG; 9×ZN;
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Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state)	8tvp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Cryo-EM structure of CPD-stalled Pol II (conformation 1)	8tvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Cryo-EM structure of CPD stalled 10-subunit Pol II in complex with Rad26	8tvq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Cryo-EM structure of backtracked Pol II in complex with Rad26	8tvs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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The RNA polymerase II elongation complex from Saccharomyces cerevisiae	9ja1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P34087; P38902; P40422;	3-268	100	6×ZN; 2×MG; 1×ATP;
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the P-lobe of RNA polymerase II pre-initiation complex	5fmf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1;	3-268	100	2×MG; 9×ZN;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	3-268	100	8×ZN; 1×MG;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422; P41896;	3-268	100	9×ZN; 1×MG;
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Architecture of the RNA polymerase II-Mediator core transcription initiation complex	4v1o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P34087; P34162; P38304; P38782; P38902; P40422; P41896; Q99278;	3-268	100	9×ZN; 1×MG;
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Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin	3cqz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422; P85421;	3-267	100	8×ZN;
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RNA polymerase II elongation complex in the presence of 3d-Napht-A	5ot2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	3-267	100	8×ZN; 1×MG; 1×AHW;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c3e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	4-268	100	9×ZN; 2×MG;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c44 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	4-268	100
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c4x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	4-268	100	9×ZN; 2×MG;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c4j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P38902; P40422;	4-268	100	9×ZN; 1×MG;
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubb…	5c4a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	4-268	100	8×ZN; 2×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso…	8ceo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	4-268	100	1×SF4; 17×ZN; 1×MG;
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RNA polymerase II-Spt4/5-nucleosome-Chd1 structure	7nkx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32657; P32914; P34087; P38902; P40422; P62799; P84233;	4-268	100	8×ZN; 1×MG; 1×ADP; 1×BEF;
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RNA Polymerase II-Spt4/5-nucleosome-FACT structure	7nky PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06897; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32558; P32914; P34087; P38902; P40422; P62799; P84233; Q04636;	4-268	100	9×ZN; 1×MG;
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Structure of EC+EC (leading EC-focused)	7mka PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;	4-268	100	8×ZN; 2×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple…	7zsa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA	7o75 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex (consensus)	7o4j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)	7zs9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA	7o72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble	7o4i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA	7o73 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
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Complex structure of trailing EC of EC+EC (trailing EC-focused)	7mk9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895; P41896;	4-268	100	8×ZN; 2×MG;
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Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple…	7zsb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-268	100	17×ZN; 1×MG; 1×SF4;
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Yeast RNA polymerase II transcription pre-initiation complex with core Mediator	8cen PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12321; Q12343; Q3E7C1; Q99278;	4-268	100	1×SF4; 17×ZN; 1×MG;
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Composite map of PIC_delta_TFIIK form2	8uoq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	4-268	100	15×ZN; 2×MG; 1×SF4;
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Composite map of PICdeltaTFIIK form1	8uot PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 15×ZN; 2×MG;
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Composite structure of EC+EC	7mei PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895; P41896;	4-268	100	16×ZN; 4×MG;
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consensus map of PICdeltaTFIIK form1	8umi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	4-268	100	1×SF4; 15×ZN; 2×MG;
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Consensus map of PICdeltaTFIIK form2	8umh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	4-268	100	15×ZN; 2×MG; 1×SF4;
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Structure of Sen1 bound RNA Polymerase II pre-termination complex	8ram PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32914; P34087; P36053; P38902; P40422; Q00416;	4-267	100	9×ZN; 1×MG;
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Structure of Sen1-ADP.BeF3 bound RNA Polymerase II pre-termination complex	8rap PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27692; P27999; P32914; P34087; P36053; P38902; P40422; Q00416;	4-267	100	9×ZN; 2×MG; 1×ADP; 1×BEF;
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RNA polymerase II pre-initiation complex (PIC1)	7ml0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-265	100	17×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex (core CC1)	6gyk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P38902; P40422; P41895; P41896;	4-265	100	9×ZN; 1×MG;
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RNA polymerase II pre-initiation complex (PIC3)	7ml2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-265	100	17×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex with distorted DNA (core CCdist)	6gyl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896;	4-265	100	10×ZN; 1×MG;
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RNA polymerase II pre-initiation complex (PIC2)	7ml1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-265	100	19×ZN; 1×SF4; 1×MG;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR	5oqm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278;	4-265	100	16×ZN; 1×MG; 1×SF4;
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STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH	5oqj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-265	100	16×ZN; 1×MG; 1×SF4;
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Structure of a yeast closed complex with distorted DNA (CCdist)	6gym PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	4-265	100	1×SF4; 16×ZN; 1×MG;
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Transcription initiation complex structures elucidate DNA opening (OC)	5fyw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896;	4-265	100	10×ZN; 1×MG;
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Transcription initiation complex structures elucidate DNA opening (CC)	5fz5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04050; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896;	4-265	100	10×ZN; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	2e2j.1.E	monomer	0.83	2-268	1×ZN;	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A0L8VW06 (A0A0L8VW06_9SACH) Saccharomyces boulardii (nom inval)

RPB3p RNA polymerase II third largest subunit B44 UniProtKBInterProInteractive Modelling

Available Structures

195 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

RPB3p RNA polymerase II third largest subunit B44 UniProtKB InterPro Interactive Modelling