SMTL ID : 1i3q.1

RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.107, M.108, C.110, C.148, C.167 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.107, A:C.110, A:C.167 ZN.2: 4 residues within 4Å: Chain A: C.67, C.70, C.77, H.80 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:C.77, A:H.80 ZN.4: 4 residues within 4Å: Chain B: C.1163, C.1166, C.1182, C.1185 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1163, B:C.1166, B:C.1182, B:C.1185 ZN.5: 5 residues within 4Å: Chain C: C.86, C.88, H.91, C.92, C.95 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.86, C:C.88, C:C.92, C:C.95 ZN.6: 5 residues within 4Å: Chain G: C.7, C.10, C.29, T.31, C.32 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.7, G:C.10, G:C.29, G:C.32 ZN.7: 5 residues within 4Å: Chain G: C.75, C.78, S.80, C.103, C.106 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.75, G:C.78, G:C.103, G:C.106 ZN.8: 4 residues within 4Å: Chain H: C.7, C.10, C.45, C.46 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.45, H:C.46 ZN.9: 5 residues within 4Å: Chain J: C.31, C.34, C.48, C.51, H.53 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:C.34, J:C.51

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.481, D.483, D.485 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.481, A:D.483, A:D.485, A:D.485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cramer, P. et al., Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science (2001)

Release Date

2001-04-25

Peptides

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT: A
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE: B
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE: C
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE: D
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE: E
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE: F
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE: G
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE: H
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE: I
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
H

G
I

H
J

I
K

J
L

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT

DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE

DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE

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