P50613 | SWISS-MODEL Repository

P50613 (CDK7_HUMAN) Homo sapiens (Human)

Cyclin-dependent kinase 7 UniProtKB InterPro STRING Interactive Modelling

346 aa; Sequence (Fasta) ; 5 identical sequences: Homo sapiens: A0A0S2Z3F9; Pan troglodytes: A0A2I3S9X0, A0A6D2WVT0; Pan paniscus: A0A2R8ZZV4; Gorilla gorilla gorilla: G3RC03

It is possible new templates exist for this target since these models were created.

Available Structures

32 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
TFIID-based holo PIC on SCP promoter	7egb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	10-312	17×ZN; 1×SF4; 1×MG;
Assess
Human Mediator with RNA Polymerase II Pre-initiation complex	7nvr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; A0JLT2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O43513; O60244; O75586; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P51946; P51948; P52655; P52657; P60899; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q92759; Q96G25; Q96HR3; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9P086; Q9Y3C7;	10-312	1×SF4; 18×ZN; 1×MG;
Assess
Cryo-EM structure of CAK-THZ1	8orm SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-312	1×V0G;
Assess
Structure of the human CDK-activating kinase	6xbz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-312	1×MG; 1×AGS;
Assess
Structure of the human CAK in complex with THZ1	6xd3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-312	1×V0G;
Assess
Structure of the human Mediator-bound transcription pre-initiation complex	7lbm SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;	10-312	2×MG; 16×ZN; 1×SF4;
Assess
Cryo-EM structure of the human CAK bound to ICEC0942 (PHENIX-OPLS3e)	7b5q SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-311	1×I74;
Assess
Cryo-EM structure of the human CAK bound to ICEC0942 at 2.5 Angstroms resolution	7b5o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-311	1×I74;
Assess
Cryo-EM structure of CDK7 subunit of CAK in complex with inhibitor LDC4297	8p7l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51948;	10-311	1×WD9;
Assess
Cryo-EM structure of CAK in complex with nucleotide analogue ATPgS	8p6y SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×AGS; 1×MG;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0942	8p6v SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×I74;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0880 (ring-up conformation)	8p74 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X3Z;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0880 (ring-down conformation)	8p75 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X3Z;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0914	8p76 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X1W;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0510-S	8p70 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X4Q;
Assess
Cryo-EM structure of CAK in complex with inhibitor CT7030	8plz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×ZQ6;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0943	8p77 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×I73;
Assess
Cryo-EM structure of CAK in complex with inhibitor dinaciclib	8p78 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×1QK;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0574	8p71 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X4F;
Assess
Cryo-EM structure of CAK in complex with inhibitor BS-181	8p6w SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X2H;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0510-R	8p6z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X4L;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0768	8p72 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X2Z;
Assess
Cryo-EM structure of CAK in complex with inhibitor ICEC0829	8p73 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×X50; 1×X58;
Assess
Cryo-EM structure of CAK in complex with inhibitor BS-194	8p6x SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310	1×NS9;
Assess
Cryo-EM structure of CAK with averaged inhibitor density	8p79 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	10-310
Assess
RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)	8bvw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	13-311	1×SF4; 17×ZN; 1×MG;
Assess
Human holo-PIC in the closed state	6o9l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	13-311	2×MG; 17×ZN; 1×SF4;
Assess
RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)	8byq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P51946; P51948; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	13-310	1×SF4; 16×ZN; 1×MG;
Assess
p53-bound TFIID-based holo PIC on HDM2 promoter	7egc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P51946; P51948; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	13-310	16×ZN; 1×SF4; 1×MG;
Assess
Crystal structure of the dual T-loop phosphorylated Cdk7/CycH/Mat1 complex	8pyr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P51946; P51948;	46-311	3×EDO;
Assess
Crystal structure of the human CDK7 kinase domain in complex with LDC4297	8p4z SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	11-310	1×WZ8; 2×GOL; 1×PGE;
Assess
Crystal Structure of Human CDK7	1ua2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	13-311	1×ATP;
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
7lbm.1.8	monomer	0.81	10-312		100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P50613 (CDK7_HUMAN) Homo sapiens (Human)

Cyclin-dependent kinase 7 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

32 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Cyclin-dependent kinase 7 UniProtKB InterPro STRING Interactive Modelling