P51948 | SWISS-MODEL Repository

P51948 (MAT1_HUMAN) Homo sapiens (Human)

CDK-activating kinase assembly factor MAT1 UniProtKB InterPro STRING Interactive Modelling

309 aa; Sequence (Fasta) ; (Isoform 2); 14 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

47 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Human holo-PIC in the closed state	6o9l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O15514; P13984; P18074; P19387; P19388; P19447; P20226; P23193; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-309	100	2×MG; 17×ZN; 1×SF4;
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RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)	8byq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-308	100.0	1×SF4; 16×ZN; 1×MG;
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Structure of the human Mediator-bound transcription pre-initiation complex	7lbm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q71SY5; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;	1-308	100.0	2×MG; 16×ZN; 1×SF4;
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TFIID-based holo PIC on SCP promoter	7egb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-308	100.0	17×ZN; 1×SF4; 1×MG;
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RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)	8bvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P02281; P06897; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P52655; P52657; P60899; P62799; P84233; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-308	100.0	1×SF4; 17×ZN; 1×MG;
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Human Mediator with RNA Polymerase II Pre-initiation complex	7nvr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; A0JLT2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O43513; O60244; O75586; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P50613; P51946; P52655; P52657; P60899; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q92759; Q96G25; Q96HR3; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9P086; Q9Y3C7;	1-308	100.0	1×SF4; 18×ZN; 1×MG;
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p53-bound TFIID-based holo PIC on HDM2 promoter	7egc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P24928; P29083; P29084; P32780; P35269; P49848; P50613; P51946; P52655; P52657; P60899; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-308	100.0	16×ZN; 1×SF4; 1×MG;
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Structure of the human apo TFIIH	6o9m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P18074; P19447; P32780; Q13888; Q13889; Q6ZYL4; Q92759;	1-212	100	1×SF4; 6×ZN;
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Cryo-EM structure of the human TFIIH core complex	6nmi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P18074; P19447; P32780; Q13888; Q13889; Q6ZYL4; Q92759;	1-210	100	1×SF4; 6×ZN;
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Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positione…	8was PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positione…	8wao PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positione…	8war PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positione…	8wap PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positione…	8wal PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×W0F; 1×MG;
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Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positione…	8wan PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×MG; 1×W0F;
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Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positione…	8wak PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×W0F; 1×MG;
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Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positione…	8waq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481BYI6; A0A493TD97; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A8D1DPV6; F1RKE4; I3LCB2; I3LCH3; O00268; P13984; P18074; P19447; P20226; P21675; P29083; P29084; P32780; P35269; P49848; P52655; P52657; P60899; P85421; Q00403; Q12962; Q13888; Q13889; Q15542; Q15543; Q15544; Q15545; Q16514; Q16594; Q5VWG9; Q6P1X5; Q6ZYL4; Q7Z7C8; Q92759;	1-171	100	17×ZN; 1×SF4; 1×MG; 1×W0F;
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TFIIH in a pre-translocated state (without ADP-BeF3)	7nvw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P18074; P19447; P29083; P32780; Q13888; Q13889; Q6ZYL4; Q92759;	1-149	100	1×SF4; 7×ZN;
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TFIIH in a post-translocated state (with ADP-BeF3)	7nvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P18074; P19447; P29083; P32780; Q13888; Q13889; Q6ZYL4; Q92759;	1-149	100	1×SF4; 7×ZN; 1×ADP; 1×MG; 1×BEF;
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RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position	7nvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-149	100	1×SF4; 17×ZN; 1×MG;
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RNA polymerase II pre-initiation complex with closed promoter DNA in distal position	7nvz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	1-149	100	1×SF4; 17×ZN; 1×MG;
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Helicase domain complex	6tun PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P18074;	66-130	100	1×CL;
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Crystal structure of the dual T-loop phosphorylated Cdk7/CycH/Mat1 complex	8pyr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	3×EDO;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0574	8p71 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X4F;
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Structure of the human CDK-activating kinase	6xbz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×MG; 1×AGS;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0880 (ring-up conformation)	8p74 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X3Z;
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Cryo-EM structure of CAK-THZ1	8orm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×V0G;
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Cryo-EM structure of CAK in complex with inhibitor CT7030	8plz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×ZQ6;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0880 (ring-down conformation)	8p75 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X3Z;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0942	8p6v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×I74;
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Cryo-EM structure of CAK in complex with inhibitor BS-194	8p6x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×NS9;
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Cryo-EM structure of CAK in complex with nucleotide analogue ATPgS	8p6y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×AGS; 1×MG;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0768	8p72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X2Z;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0829	8p73 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X50; 1×X58;
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Cryo-EM structure of CAK in complex with inhibitor BS-181	8p6w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X2H;
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Cryo-EM structure of the human CAK bound to ICEC0942 at 2.5 Angstroms resolution	7b5o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×I74;
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Cryo-EM structure of the human CAK bound to ICEC0942 (PHENIX-OPLS3e)	7b5q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×I74;
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Cryo-EM structure of CAK in complex with inhibitor dinaciclib	8p78 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×1QK;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0943	8p77 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×I73;
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Structure of the human CAK in complex with THZ1	6xd3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×V0G;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0510-S	8p70 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X4Q;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0510-R	8p6z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X4L;
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Cryo-EM structure of CAK in complex with inhibitor ICEC0914	8p76 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100	1×X1W;
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Cryo-EM structure of CAK with averaged inhibitor density	8p79 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613; P51946;	244-308	100
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Cryo-EM structure of CDK7 subunit of CAK in complex with inhibitor LDC4297	8p7l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P50613;	244-296	100.0	1×WD9;
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RNA polymerase II pre-initiation complex with open promoter DNA	7nw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; A0A7M4DUC2; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P13984; P18074; P19447; P20226; P29083; P29084; P32780; P35269; P52655; P52657; P60899; Q00403; Q13888; Q13889; Q6ZYL4; Q92759;	67-110	100	1×SF4; 15×ZN; 1×ADP; 2×MG; 1×BEF;
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SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN TFIIH MAT1 SUBUNIT	1g25 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1-65	100	2×ZN;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8byq.1.H	monomer	0.65	1-308	2×ZN;	100.00
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7lbm.1.7	monomer	0.61	1-308	2×ZN;	100.00
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6o9l.1.Y	monomer	0.55	1-309	2×ZN;	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

3 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8byq.1.H	monomer	0.65	1-266	2×ZN;	100.00
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Isoform 2	7lbm.1.7	monomer	0.64	1-266	2×ZN;	100.00
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Isoform 2	6o9l.1.Y	monomer	0.54	1-267	2×ZN;	100.00
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P51948 (MAT1_HUMAN) Homo sapiens (Human)

CDK-activating kinase assembly factor MAT1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

47 Experimental Structures

3 SWISS-MODEL models

3 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

CDK-activating kinase assembly factor MAT1 UniProtKB InterPro STRING Interactive Modelling