Q03164 (KMT2A_HUMAN) Homo sapiens (Human)

Histone-lysine N-methyltransferase 2A UniProtKBInterProSTRINGInteractive Modelling

3969 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; )

Sequence Features

 1155Zinc.
 1158Zinc.
 1161Zinc.
 1167Zinc.
 1170Zinc.
 1173Zinc.
 1189Zinc.
 1194Zinc.
 3909Zinc.
 3957Zinc.
 3959Zinc.
 3964Zinc.
 1362Breakpoint for translocation to form KMT2A-FRYL fusion protein.
 3765Important for WDR5-recognition and binding.
 30A -> G (in dbSNP:rs9332745). VAR_021317 dbSNP
 53A -> V (in dbSNP:rs9332747). VAR_021318 dbSNP
 502E -> K (in dbSNP:rs9332772). VAR_021319 dbSNP
 1975Q -> P (in dbSNP:rs693598). VAR_052652 dbSNP
 2319S -> T (in dbSNP:rs9332837). VAR_021320 dbSNP
 2354P -> R (in dbSNP:rs9332838). VAR_021321 dbSNP
 2387Q -> R (in dbSNP:rs9332839). VAR_021322 dbSNP
 3714V -> I (in dbSNP:rs9332859). VAR_021323 dbSNP
 3773S -> A (in dbSNP:rs9332861). VAR_021324 dbSNP
 169-180A.T hook 1.
 217-227A.T hook 2.
 301-309A.T hook 3.
 1147-1195CXXC-type.
 1431-1482PHD-type 1.
 1479-1533PHD-type 2.
 1566-1627PHD-type 3.
 1870-1910C2HC pre-PHD-type.
 1931-1978PHD-type 4.
 1334-1335Breakpoint for translocation to form KMT2A-ZFYVE19 oncogene.
 1362-1363Breakpoint for translocation to form KMT2A-AF3P21 and KMT2A-KNL1 oncogenes.
 1362-1363Breakpoint for translocation to form KMT2A-CENPK oncogene.
 1406-1407Breakpoint for translocation to form KMT2A-AFF4 fusion protein.
 1444-1445Breakpoint for translocation to form KMT2A-GAS7 oncogene.
 1444-1445Breakpoint for translocation to form KMT2A-LPP.
 2666-2667Cleavage; by TASP1, site 1.
 2718-2719Cleavage; by TASP1, site 2.
 1148-1194Zinc finger, CXXC-type
IPR002857PF02008
 1481-1533Zinc finger, PHD-finger
IPR019787PF00628
 1569-1626Zinc finger, PHD-finger
IPR019787PF00628
 2024-2071FY-rich, N-terminal
IPR003888PF05964
 3669-3748FY-rich, C-terminal
IPR003889PF05965
 3840-3944SET domain
IPR001214PF00856

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me3 peptide Heteromer
P68431;
ZN;3lqj1566-1779
Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me2 peptide Heteromer
P68431;
ZN;3lqi1566-1778
Cryo-EM structure of human MLL1-ubNCP complex (3.2 angstrom) Heteromer
A0A310TTQ1; P02281; P61964; P62799; P62979; Q15291; Q6AZJ8; Q9UBL3;
ZN;SAH;GLN;LYS;6kiu3764-3969
Cryo-EM structure of human MLL1-ubNCP complex (4.0 angstrom) Heteromer
A0A310TTQ1; P02281; P61964; P62799; P62979; Q15291; Q6AZJ8; Q9UBL3;
ZN;SAH;6kiv3764-3969
Cryo-EM structure of human MLL1-NCP complex, binding mode1 Heteromer
A0A310TTQ1; P02281; P61964; P62799; Q15291; Q6AZJ8; Q9UBL3;
ZN;SAH;GLN;LYS;6kix3764-3969
Cryo-EM structure of human MLL1-NCP complex, binding mode2 Heteromer
A0A310TTQ1; P02281; P61964; P62799; Q15291; Q6AZJ8; Q9UBL3;
ZN;SAH;6kiz3764-3969
Ternary Complex of the Mixed Lineage Leukaemia (MLL1) SET Domain with the cofactor product S-Aden... Heteromer
P68433;
GOL;ZN;SAH;2w5z3790-3969
The crystal structure of MLL1 (N3861I/Q3867L) in complex with RbBP5 and Ash2L Heteromer
Q15291; Q9UBL3;
ZN;SAH;5f6l3814-3969
Crystal structure of human menin in complex with MLL1 and LEDGF Heteromer
O00255; O75475;
0BR;CHD;SO4;GLV;GGB;3u88103-135
Structural basis for cooperative transcription factor binding to the CBP coactivator Heteromer
P06876; P45481;
2agh2839-2869
Crystal structure of the KIX domain of CBP in complex with a MLL/c-Myb chimera Heteromer
P01103; Q92793;
12×GOL; 42×CL;5svh2843-2869
Solution structure of LEDGF/p75 IBD in complex with MLL1 peptide (140-160) Heteromer
O75475;
2msr140-160
'Allosteric communication in the KIX domain proceeds through dynamic re-packing of the hydrophobi... Heteromer
Q92793;
2lxs2840-2858
'Allosteric communication in the KIX domain proceeds through dynamic re-packing of the hydrophobi... Heteromer
P16220; Q92793;
2lxt2840-2858
X-ray structure of WDR5-MLL1 Win motif peptide binary complex Heteromer
P61964;
4esg3755-3770
Human menin in complex with MLL peptide Heteromer
O00255;
SO4;1PE;4gq66-15
Structure of WDR5 bound to MLL1 peptide Heteromer
P61964;
SO4;3eg63762-3770
Structural and biochemical insights into MLL1 core complex assembly and regulation. Heteromer
P61964; Q15291;
3p4f3762-3770
Crystal structure of human menin in complex with MLL1 Heteromer
O00255;
3u856-13
Structural basis of WDR5-MLL interaction Heteromer
P61964;
SO4;3emh3764-3769
Crystal structure of MLL1 PHD3-Bromo in the free formmonomer ZN;3lqh1566-1778
'Binary Complex of the Mixed Lineage Leukaemia (MLL1) SET Domain with the cofactor product S-Aden...monomer ZN;SAH;2w5y3793-3969
The Crystal Structure of MLL1 SET domain with N3816I/Q3867L mutationmonomer ZN;SAH;5f5e3814-3969
'Solution structure of the nonmethyl-CpG-binding CXXC domain of the leukaemia-associated MLL hist...monomer ZN;2j2s1143-1214
The solution structure of the PHD3 finger of MLLmonomer ZN;2kyu1564-1628
Solution structure of MLL CXXC domain in complex with palindromic CPG DNAmonomer ZN;2kkf1147-1203
Solution structure of MLL CXXC domainmonomer ZN;2jyi1147-1203
Crystal structure of MLL CXXC domain in complex with a CpG DNAmonomer ZN;4nw31150-1200
Solution structure of the LEDGF/p75 IBD - MLL1 (aa 111-160) complexmonomer 6emq111-160
Solution structure of MLL1 PHD3-Cyp33 RRM chimeric proteinmonomer 2ku71585-1628
Solution structure of MLL-IBD complexmonomer 2mtn122-160

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
3monomerZN;SAH;-1.452w5y.1.A3796-3972
100.00
2monomerZN;SAH;-1.472w5y.1.A3755-3931
100.00
2monomerZN;-2.143lqh.1.A1528-1740
100.00
3monomerZN;-2.223lqh.1.A1566-1781
100.00
3monomerZN;-3.593hna.1.A3780-3970
30.90
2monomerZN;-3.633hna.1.A3739-3929
30.90