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SMTL ID : 6pwv.1

Cryo-EM structure of MLL1 core complex bound to the nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-2-2-2-2-2-1-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1:	12 residues within 4Å: Chain C: I.78, H.79, G.80, R.81, Y.123, F.144, N.146, P.196, C.197, N.198, C.199 Ligands: SAH.3 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:H.79, C:R.81, C:R.81, C:H.147, C:N.198, C:N.198 Salt bridges: C:R.81
SAH.3:	12 residues within 4Å: Chain C: R.81, Y.123, R.143, F.144, I.145, N.146, H.147, Y.184, P.196, C.197, L.208 Ligands: SAH.1 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.123, C:F.144, C:N.146, C:H.147, C:H.147 pi-Stacking: C:Y.184

2 x ZN: ZINC ION(Non-covalent)

ZN.2:	6 residues within 4Å: Chain C: S.148, C.149, C.197, C.199, C.204 Ligands: ZN.4 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.199
ZN.4:	6 residues within 4Å: Chain C: H.147, S.148, C.149, C.197, C.199 Ligands: ZN.2 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Park, S.H. et al., Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nat Commun (2019)

Release Date

2019-12-18

Peptides

Retinoblastoma-binding protein 5: A
WD repeat-containing protein 5: B
Histone-lysine N-methyltransferase 2A: C
Histone H3.2: DH
Histone H4: EI
Histone H2A type 1: FJ
Histone H2B 1.1: GK
Protein dpy-30 homolog: NO
Set1/Ash2 histone methyltransferase complex subunit ASH2: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

H
K

E
H

I
L

F
I

J
M

G
J

K
N

N
E

O
F

P
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Retinoblastoma-binding protein 5

WD repeat-containing protein 5

Histone-lysine N-methyltransferase 2A

Histone H3.2

Toggle Identical (DH)

Histone H4

Toggle Identical (EI)

Histone H2A type 1

Toggle Identical (FJ)

Histone H2B 1.1

Toggle Identical (GK)

Protein dpy-30 homolog

Set1/Ash2 histone methyltransferase complex subunit ASH2

Related Entries With Identical Sequence

1eqz.1 | 1f66.1 | 1hq3.1 | 1s32.1 | 1tzy.1 | 1u35.1 | 1zbb.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 2fj7.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 | 3mvd.1 | 3nqu.1 | 3o62.1 | 3r45.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 4gm3.1 more...less...

4gm3.2 | 4gm3.3 | 4gm3.4 | 4gm3.5 | 4gm3.6 | 4gm3.7 | 4gm3.8 | 4gm8.1 | 4gm8.2 | 4gm8.3 | 4gm8.4 | 4gm9.1 | 4gm9.2 | 4gmb.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4y7r.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5f99.1 | 5hq2.1 | 5kgf.1 | 5nl0.1 | 5nl0.2 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5x0y.1 | 5xf3.1 | 5xf4.1 | 5xf5.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6buz.1 | 6d9x.1 | 6dai.1 | 6dak.1 | 6dar.1 | 6das.1 | 6das.2 | 6e0c.1 | 6e0p.1 | 6e1y.1 | 6e1y.2 | 6e1z.1 | 6e1z.2 | 6e22.1 | 6e22.2 | 6e23.1 | 6e23.2 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6iro.1 | 6j99.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6ne3.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6ofz.1 | 6oi0.1 | 6oi1.1 | 6oi2.1 | 6oi3.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r1u.1 | 6r25.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6s01.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6t9l.1 | 6tda.1 | 6tem.1 | 6ucs.1 | 6ucs.2 | 6ujh.1 | 6ujh.2 | 6ujj.1 | 6ujl.1 | 6upk.1 | 6upl.1 | 6uxw.1 | 6v92.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wjq.1 | 6wjq.2 | 6wkr.1 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7at8.1 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7dbp.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7swy.1 | 7tan.1 | 7tn2.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7uas.1 | 7uas.2 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7wvk.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7xpx.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8a3y.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8f86.1 | 8g3c.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gpn.1 | 8h1t.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8of4.1 | 8off.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8siy.1 | 8skz.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8t9g.1 | 8tas.1 | 8tb9.1 | 8thu.1 | 8tof.1 | 8u5h.1 | 8uw1.1 | 8v25.1 | 8v26.1 | 8v27.1 | 8v28.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8vx5.1 | 8vx6.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xjv.24 | 8xjv.25 | 8xjv.26 | 8xjv.27 | 8xjv.28 | 8xjv.29 | 8xjv.30 | 8xjv.31 | 8xjv.32 | 8xjv.33 | 8xjv.34 | 8xjv.35 | 8xjv.36 | 8xjv.37 | 8xjv.38 | 8xjv.39 | 8xjv.40 | 8xjv.41 | 8xjv.42 | 8xjv.43 | 8xjv.44 | 8xjv.45 | 8xjv.46 | 8xjv.47 | 8xjv.48 | 8xjv.49 | 8xjv.50 | 8xjv.51 | 8xjv.52 | 8xjv.53 | 8xjv.54 | 8xjv.55 | 8xjv.56 | 8xjv.57 | 8xjv.58 | 8xjv.59 | 8xjv.60 | 8xjv.61 | 8xjv.62 | 8xjv.63 | 8xjv.64 | 8xjv.65 | 8xjv.66 | 8xjv.67 | 8xjv.68 | 8xjv.69 | 8xjv.70 | 8xjv.71 | 8yjf.1 | 8yjm.1 | 8yti.1 | 8z50.1 | 9b3p.1 | 9dby.1 | 9dde.1 | 9dg3.1 | 9dgg.1 | 9egx.1 | 9egy.1 | 9egz.1 | 9eh0.1 | 9eh2.1 | 9fgq.1 | 9fh9.1 | 9gd0.1 | 9gd1.1 | 9gd2.1 | 9gd3.1

Cartoon
Tube
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Background

Transparent

Resolution

Low
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Extreme

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