SMTL ID : 6pww.1

Cryo-EM structure of MLL1 in complex with RbBP5 and WDR5 bound to the nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-2-2-2-2-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)

SAH.1: 17 residues within 4Å: Chain C: S.76, I.78, H.79, G.80, R.81, Y.123, R.143, F.144, I.145, N.146, H.147, Y.184, L.195, P.196, C.197, N.198, L.208 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.76, C:H.79, C:H.79, C:R.81, C:N.146, C:N.146, C:H.147, C:H.147, C:N.198 Salt bridges: C:H.79

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain C: S.148, C.149, E.150, C.197, C.199, C.204 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, S.H. et al., Cryo-EM structure of the human MLL1 core complex bound to the nucleosome. Nat Commun (2019)

Release Date

2019-12-18

Peptides

Retinoblastoma-binding protein 5: A
WD repeat-containing protein 5: B
Histone-lysine N-methyltransferase 2A: C
Histone H3.2: DH
Histone H4: EM
Histone H2A type 1: FI
Histone H2B 1.1: GJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

H
K

E
H

M
L

F
I

I
M

G
J

J
N

Retinoblastoma-binding protein 5

WD repeat-containing protein 5

Histone-lysine N-methyltransferase 2A

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B 1.1

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