SMTL ID : 6kiz.1

Cryo-EM structure of human MLL1-NCP complex, binding mode2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)

SAH.1: 12 residues within 4Å: Chain L: I.85, H.86, G.87, R.88, C.129, Y.130, F.151, N.153, H.154, Y.191, C.204, N.205 7 PLIP interactions: 7 interactions with chain L Hydrogen bonds: L:R.88, L:Y.130, L:N.153, L:H.154, L:Y.191, L:N.205 Salt bridges: L:R.88

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain L: C.204, N.205, C.206, C.211 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.204, L:C.204, L:C.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, H. et al., Structural basis of nucleosome recognition and modification by MLL methyltransferases. Nature (2019)

Release Date

2019-09-11

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
Retinoblastoma-binding protein 5: K
Histone-lysine N-methyltransferase 2A: L
WD repeat-containing protein 5: M
Set1/Ash2 histone methyltransferase complex subunit ASH2: N

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
N

L
K

M
R

N
T

Histone H3

Histone H4

Histone H2A

Histone H2B 1.1

Retinoblastoma-binding protein 5

Histone-lysine N-methyltransferase 2A

WD repeat-containing protein 5

Set1/Ash2 histone methyltransferase complex subunit ASH2

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