SMTL ID : 111m.1

SPERM WHALE MYOGLOBIN D122N N-BUTYL ISOCYANIDE AT PH 9.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.52, E.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.52, A:E.53 Water bridges: A:A.54

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 16 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, F.139 Ligands: NBN.3 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:V.69, A:A.72, A:L.90, A:I.100, A:Y.104, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:H.65 Salt bridges: A:R.46, A:H.65, A:H.94, A:H.98 pi-Stacking: A:H.65, A:H.94, A:H.94, A:H.98 Metal complexes: A:H.94

1 x NBN: N-BUTYL ISOCYANIDE(Non-covalent)

NBN.3: 7 residues within 4Å: Chain A: L.30, L.33, F.44, H.65, V.69, I.108 Ligands: HEM.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.30, A:L.33, A:F.44, A:V.69, A:I.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, R.D., Correlations between Bound N-Alkyl Isocyanide Orientations and Pathways for Ligand Binding in Recombinant Myoglobins. Thesis, Rice (1999)

Release Date

1998-04-08

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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