SMTL ID : 1j52.1

Recombinant sperm whale myoglobin in the presence of 7atm xenon

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.52, E.53, A.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53, A:A.54

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 17 residues within 4Å: Chain A: T.40, K.43, F.44, R.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105 Ligands: XE.3, XE.4 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:A.72, A:L.90, A:I.100, A:Y.104 Hydrogen bonds: A:S.93 Water bridges: A:R.46, A:H.65, A:P.89, A:S.93 Salt bridges: A:R.46, A:H.94, A:H.98 pi-Stacking: A:H.98 Metal complexes: A:H.94, H2O.1

4 x XE: XENON(Non-covalent)

XE.3: 2 residues within 4Å: Chain A: H.94 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) XE.4: 4 residues within 4Å: Chain A: L.105, S.109, F.139 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) XE.5: 4 residues within 4Å: Chain A: I.76, H.83, A.135, F.139 No protein-ligand interaction detected (PLIP) XE.6: 5 residues within 4Å: Chain A: G.26, I.29, L.30, V.69, L.70 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Radding, W. et al., Internal Cavities in Myoglobin: Implications for Protein Action. To be Published

Release Date

2003-11-11

Peptides

myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

myoglobin

Related Entries With Identical Sequence