SMTL ID : 1kzo.1

PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYLATED K-RAS4B PEPTIDE PRODUCT AND FARNESYL DIPHOSPHATE SUBSTRATE BOUND SIMULTANEOUSLY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362, H2O.17

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 16 residues within 4Å: Chain A: K.164, Y.166, H.201 Chain B: W.102, R.202, Y.205, H.248, G.250, C.254, R.291, K.294, Y.300, W.303, Y.361 Chain C: V.9, I.10 22 PLIP interactions: 19 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:W.102, B:Y.205, B:W.303, C:I.10, C:I.10 Hydrogen bonds: B:Y.300 Water bridges: B:G.290, B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:L.295, B:L.295, B:Y.300 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 5 residues within 4Å: Chain B: Y.81, L.89, T.90, Y.93, F.360 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.81, B:Y.93, B:F.360 Hydrogen bonds: B:T.90 Water bridges: B:Q.88

1 x FAR: FARNESYL(Non-covalent)

FAR.4: 9 residues within 4Å: Chain B: A.92, Y.93, C.95, L.96, S.357, D.359, Y.361 Chain C: K.7, C.8 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.92, B:Y.93, B:L.96, B:D.359, B:Y.361, B:Y.361, B:Y.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Long, S.B. et al., The Reaction Path of Protein Farnesyltransferase at Atomic Resolution. Nature (2002)

Release Date

2002-10-16

Peptides

Protein Farnesyltransferase alpha subunit: A
Protein Farnesyltransferase beta subunit: B
Farnesylated K-Ras4B peptide product: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Protein Farnesyltransferase alpha subunit

Protein Farnesyltransferase beta subunit

Farnesylated K-Ras4B peptide product

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