SMTL ID : 1nbm.1

THE STRUCTURE OF BOVINE F1-ATPASE COVALENTLY INHIBITED WITH 4-CHLORO-7-NITROBENZOFURAZAN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-1-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.176, Q.208, D.269 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.176 MG.3: 4 residues within 4Å: Chain B: T.176, Q.208, D.269 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.176 MG.5: 4 residues within 4Å: Chain C: T.176, Q.208, D.269 Ligands: ATP.6 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.176 MG.7: 2 residues within 4Å: Chain D: T.167 Ligands: ADP.8 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:T.167, H2O.4 MG.10: 5 residues within 4Å: Chain F: T.167, E.192, E.196, D.260 Ligands: ATP.11 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.167

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 14 residues within 4Å: Chain A: D.170, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, Q.430, G.431, Q.432 Chain D: R.376 Ligands: MG.1 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:Q.172, A:Q.172, A:T.173, A:G.174, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430, D:R.376 Water bridges: A:Q.432 Salt bridges: A:K.175, A:K.175 ATP.4: 16 residues within 4Å: Chain B: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, Q.430, G.431, Q.432 Chain E: R.360, D.363 Ligands: MG.3 15 PLIP interactions: 12 interactions with chain B, 3 interactions with chain E Hydrogen bonds: B:Q.172, B:Q.172, B:T.173, B:G.174, B:K.175, B:T.176, B:S.177, B:S.177, B:Q.430, B:Q.432, B:Q.432, E:R.360, E:D.363, E:D.363 Salt bridges: B:K.175 ATP.6: 15 residues within 4Å: Chain C: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, P.363, Q.430, G.431, Q.432 Chain F: M.362 Ligands: MG.5 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:T.176, C:S.177, C:S.177, C:Q.430, F:M.362 Water bridges: C:Q.172, C:Q.432 Salt bridges: C:K.175, C:K.175 ATP.11: 21 residues within 4Å: Chain B: I.343, S.344, V.371, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.315, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.10 16 PLIP interactions: 12 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:G.163, F:V.164, F:G.165, F:K.166, F:T.167, F:V.168, B:S.344 Water bridges: F:Y.349, F:Q.420 Salt bridges: F:K.166, F:K.166, F:R.193, B:R.373, B:R.373, B:R.373 pi-Stacking: F:Y.349

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.8: 16 residues within 4Å: Chain C: S.372, R.373 Chain D: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.7 15 PLIP interactions: 12 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:G.161, D:G.163, D:V.164, D:G.165, D:K.166, D:T.167, D:V.168, C:S.372 Water bridges: D:K.166, D:K.166, D:R.193 Salt bridges: D:K.166, C:R.373, C:R.373 pi-Stacking: D:Y.349

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 6 residues within 4Å: Chain E: A.162, G.163, V.164, G.165, K.166, T.167 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.163, E:V.164, E:G.165, E:K.166, E:T.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orriss, G.L. et al., Bovine F1-ATPase covalently inhibited with 4-chloro-7-nitrobenzofurazan: the structure provides further support for a rotary catalytic mechanism. Structure (1998)

Release Date

1998-08-26

Peptides

F1-ATPASE: ABC
F1-ATPASE: DEF
F1-ATPASE: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

F1-ATPASE

F1-ATPASE

F1-ATPASE

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