SMTL ID : 1e1q.1

BOVINE MITOCHONDRIAL F1-ATPASE AT 100K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-3-3-1-mer

Ligands

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 14 residues within 4Å: Chain A: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, Q.432 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.172, A:Q.172, A:T.173, A:T.173, A:G.174, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430, A:Q.432 Water bridges: A:K.175, A:K.175, A:T.176, A:Y.433 ANP.3: 15 residues within 4Å: Chain B: R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain E: D.363 Ligands: MG.4 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:R.171, B:Q.172, B:Q.172, B:T.173, B:G.174, B:K.175, B:K.175, B:K.175, B:T.176, B:S.177, B:S.177, B:R.362, B:Q.430, E:D.363 ANP.5: 16 residues within 4Å: Chain C: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain F: Y.372 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:K.175, C:T.176, C:T.176, C:S.177, C:S.177, C:E.328, C:Q.430, C:Q.432 ANP.10: 21 residues within 4Å: Chain B: I.343, S.344, V.371, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.315, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.11 20 PLIP interactions: 16 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:G.163, F:V.164, F:G.165, F:K.166, F:K.166, F:K.166, F:T.167, F:T.167, F:V.168, F:R.193, F:R.193, F:Y.349, B:S.344, B:R.373, B:R.373 Water bridges: F:L.169, F:Q.420 pi-Stacking: F:Y.349, F:Y.349 Salt bridges: B:R.373

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.176 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.176, H2O.2 MG.4: 3 residues within 4Å: Chain B: T.176, D.269 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.176 MG.6: 2 residues within 4Å: Chain C: T.176 Ligands: ANP.5 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:T.176, H2O.9 MG.8: 4 residues within 4Å: Chain D: T.167, R.193, E.196 Ligands: ADP.7 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:T.167, H2O.13 MG.11: 3 residues within 4Å: Chain F: T.167, E.196 Ligands: ANP.10 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:T.167, H2O.21

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 16 residues within 4Å: Chain C: S.372, R.373 Chain D: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.8 17 PLIP interactions: 4 interactions with chain C, 13 interactions with chain D Hydrogen bonds: C:S.372, D:G.161, D:G.163, D:V.164, D:G.165, D:K.166, D:T.167, D:V.168, D:Y.349 Water bridges: C:R.373, D:K.166, D:L.169 Salt bridges: C:R.373, C:R.373, D:K.166 pi-Stacking: D:Y.349, D:Y.349

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.9: 6 residues within 4Å: Chain E: A.162, G.163, V.164, G.165, K.166, T.167 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.163, E:V.164, E:G.165, E:K.166, E:T.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braig, K. et al., Structure of Bovine Mitochondrial F1-ATPase Inhibited by Mg2+Adp and Aluminium Fluoride. Structure (2000)

Release Date

2000-06-28

Peptides

BOVINE MITOCHONDRIAL F1-ATPASE: ABC
BOVINE MITOCHONDRIAL F1-ATPASE: DEF
BOVINE MITOCHONDRIAL F1-ATPASE: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

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