SMTL ID : 1e1r.1

BOVINE MITOCHONDRIAL F1-ATPASE INHIBITED BY MG2+ADP AND ALUMINIUM FLUORIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-1-mer

Ligands

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain D: Y.372 Ligands: MG.2 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:Q.172, A:Q.172, A:T.173, A:T.173, A:G.174, A:K.175, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430, A:Q.432, A:Q.432 Water bridges: A:Q.172, A:T.176, A:T.176, A:S.177, A:Y.433, D:S.359 ANP.3: 16 residues within 4Å: Chain B: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, Q.430, G.431, Q.432 Chain E: R.360, D.363 Ligands: MG.4 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain E Hydrogen bonds: B:Q.172, B:Q.172, B:T.173, B:G.174, B:K.175, B:K.175, B:T.176, B:S.177, B:S.177, B:R.362, B:Q.430 Water bridges: B:T.176, B:Q.432, B:Q.432, E:R.360, E:R.360 ANP.5: 16 residues within 4Å: Chain C: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain F: Y.372 Ligands: MG.6 21 PLIP interactions: 20 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:K.175, C:T.176, C:S.177, C:S.177, C:Q.430 Water bridges: C:Q.172, C:Q.172, C:T.176, C:T.176, C:D.270, C:D.270, C:D.270, C:E.328, C:E.328, C:E.328, F:S.359 ANP.11: 21 residues within 4Å: Chain B: I.343, S.344, V.371, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.315, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.12 18 PLIP interactions: 14 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:G.163, F:V.164, F:G.165, F:K.166, F:K.166, F:K.166, F:T.167, F:V.168, F:R.193, F:R.193, F:Y.349, B:S.344, B:R.373, B:R.373 Water bridges: F:T.167 pi-Stacking: F:Y.349, F:Y.349 Salt bridges: B:R.373

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.176 Ligands: ANP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.176, H2O.2, H2O.6 MG.4: 2 residues within 4Å: Chain B: T.176 Ligands: ANP.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.176, H2O.8, H2O.11 MG.6: 3 residues within 4Å: Chain C: T.176, D.269 Ligands: ANP.5 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:T.176, H2O.13, H2O.13, H2O.17 MG.8: 5 residues within 4Å: Chain D: T.167, E.192, R.193 Ligands: ADP.7, AF3.9 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:T.167, H2O.19, H2O.20, H2O.23 MG.12: 3 residues within 4Å: Chain F: T.167, E.192 Ligands: ANP.11 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:T.167, H2O.30, H2O.33

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 18 residues within 4Å: Chain C: V.371, S.372, R.373 Chain D: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.8, AF3.9 20 PLIP interactions: 14 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:G.163, D:V.164, D:G.165, D:K.166, D:T.167, D:T.167, D:V.168, D:Y.349, C:S.372 Water bridges: D:T.167, D:E.196, D:Q.420, C:S.372, C:R.373, C:R.373 Salt bridges: D:K.166, C:R.373, C:R.373 pi-Stacking: D:Y.349, D:Y.349

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.9: 12 residues within 4Å: Chain C: I.343, S.344, R.373 Chain D: G.161, A.162, G.163, K.166, E.192, R.193, Y.315 Ligands: ADP.7, MG.8 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 7 residues within 4Å: Chain E: G.161, A.162, G.163, V.164, G.165, K.166, T.167 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:G.161, E:G.163, E:V.164, E:G.165, E:K.166, E:T.167, E:T.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braig, K. et al., Structure of Bovine Mitochondrial F1-ATPase Inhibited by Mg2+Adp and Aluminium Fluoride. Structure (2000)

Release Date

2000-06-28

Peptides

BOVINE MITOCHONDRIAL F1-ATPASE: ABC
BOVINE MITOCHONDRIAL F1-ATPASE: DEF
BOVINE MITOCHONDRIAL F1-ATPASE: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

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