SMTL ID : 1cow.1

BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-1-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.176 Ligands: ANP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.176, H2O.3 MG.3: 3 residues within 4Å: Chain B: T.176, D.269 Ligands: ANP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.176 MG.5: 2 residues within 4Å: Chain C: T.176 Ligands: ANP.6 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.176 MG.7: 5 residues within 4Å: Chain D: T.167, E.192, R.193, E.196 Ligands: ADP.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.167 MG.10: 4 residues within 4Å: Chain F: T.167, E.192, R.193 Ligands: ANP.11 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.167

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 15 residues within 4Å: Chain A: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.172, A:Q.172, A:T.173, A:T.173, A:G.174, A:K.175, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430, A:Q.432, A:Y.433 Water bridges: A:R.362 ANP.4: 14 residues within 4Å: Chain B: R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, Q.430, G.431, Q.432 Chain E: D.363 Ligands: MG.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Q.172, B:Q.172, B:T.173, B:G.174, B:K.175, B:K.175, B:T.176, B:S.177, B:S.177, B:R.362, B:Q.430 ANP.6: 17 residues within 4Å: Chain C: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, E.328, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain F: Y.372 Ligands: MG.5 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:K.175, C:T.176, C:T.176, C:S.177, C:S.177, C:E.328, C:Q.430, C:Q.432 Water bridges: C:Q.172, F:S.359 ANP.11: 20 residues within 4Å: Chain B: I.343, S.344, V.371, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.315, Y.349, F.422, A.425, F.428 Ligands: MG.10 15 PLIP interactions: 4 interactions with chain B, 11 interactions with chain F Hydrogen bonds: B:S.344, B:R.373, B:R.373, F:G.163, F:V.164, F:G.165, F:K.166, F:K.166, F:T.167, F:T.167, F:V.168, F:R.193, F:R.193 Salt bridges: B:R.373 pi-Stacking: F:Y.349

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.8: 16 residues within 4Å: Chain C: S.372, R.373 Chain D: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.7 21 PLIP interactions: 17 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.161, D:G.163, D:V.164, D:G.165, D:K.166, D:T.167, D:V.168, D:Y.349, C:S.372 Water bridges: D:K.166, D:L.169, D:L.169, D:R.193, D:E.196, D:E.196, C:R.373 Salt bridges: D:K.166, C:R.373, C:R.373 pi-Stacking: D:Y.349, D:Y.349

2 x AUR: AUROVERTIN B(Non-covalent)

AUR.9: 12 residues within 4Å: Chain E: I.343, L.346, I.348, P.354, L.355, L.382, Y.385, Q.389, Q.415, R.416, Q.459, Y.462 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:L.346, E:L.346, E:I.348, E:I.348, E:P.354, E:L.355, E:L.382, E:Q.459 Hydrogen bonds: E:Q.415 Salt bridges: E:R.416 pi-Stacking: E:Y.462 AUR.12: 13 residues within 4Å: Chain B: E.399 Chain F: I.343, L.346, I.348, P.354, L.355, L.382, Q.389, Q.415, R.416, E.458, Q.459, Y.462 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:L.346, F:I.348, F:I.348, F:P.354, F:L.355, F:L.382, F:Q.415, F:Y.462 Hydrogen bonds: F:Q.415 Salt bridges: F:R.416 pi-Stacking: F:Y.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Raaij, M.J. et al., The structure of bovine F1-ATPase complexed with the antibiotic inhibitor aurovertin B. Proc.Natl.Acad.Sci.USA (1996)

Release Date

1996-08-17

Peptides

BOVINE MITOCHONDRIAL F1-ATPASE: ABC
BOVINE MITOCHONDRIAL F1-ATPASE: DEF
BOVINE MITOCHONDRIAL F1-ATPASE: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

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