SMTL ID : 1ohh.1

BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE INHIBITOR PROTEIN IF1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

5 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain D: Y.372 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.172, A:Q.172, A:T.173, A:T.173, A:G.174, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430, A:Q.432 ANP.3: 16 residues within 4Å: Chain B: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, Q.430, G.431, Q.432 Chain E: R.360, D.363 Ligands: MG.4 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:Q.172, B:Q.172, B:T.173, B:G.174, B:K.175, B:K.175, B:T.176, B:T.176, B:S.177, B:S.177, B:R.362, B:Q.430, E:D.363 ANP.5: 14 residues within 4Å: Chain C: R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.432 Chain F: M.362, Y.372 Ligands: MG.6 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:T.176, C:S.177, C:S.177, C:R.362, F:Y.372 ANP.7: 16 residues within 4Å: Chain C: R.373 Chain D: A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.8 17 PLIP interactions: 14 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:G.163, D:V.164, D:G.165, D:K.166, D:K.166, D:K.166, D:T.167, D:T.167, D:V.168, D:R.193, D:R.193, C:R.373, C:R.373 pi-Stacking: D:Y.349, D:Y.349, D:F.428 Salt bridges: C:R.373 ANP.9: 21 residues within 4Å: Chain B: I.343, S.344, V.371, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.315, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.10 16 PLIP interactions: 12 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:G.161, F:G.163, F:V.164, F:K.166, F:K.166, F:T.167, F:T.167, F:V.168, F:R.193, F:R.193, B:I.343, B:R.373, B:R.373 pi-Stacking: F:Y.349, F:Y.349 Salt bridges: B:R.373

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.176 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.176 MG.4: 3 residues within 4Å: Chain B: T.176, D.269 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.176 MG.6: 3 residues within 4Å: Chain C: T.176, D.269 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.176 MG.8: 5 residues within 4Å: Chain D: T.167, E.192, R.193, E.196 Ligands: ANP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.167 MG.10: 4 residues within 4Å: Chain F: T.167, E.192, D.260 Ligands: ANP.9 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.167, F:E.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cabezon, E. et al., The Structure of Bovine F1-ATPase in Complex with its Regulatory Protein If1. Nat.Struct.Biol. (2003)

Release Date

2003-06-09

Peptides

ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL: ABC
ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL: DEF
ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL: G
ATPASE INHIBITOR, MITOCHONDRIAL: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

ATP SYNTHASE ALPHA CHAIN HEART ISOFORM, MITOCHONDRIAL

ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL

ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL

ATPASE INHIBITOR, MITOCHONDRIAL

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