SMTL ID : 2wss.2 (1 other biounit)

The structure of the membrane extrinsic region of bovine ATP synthase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-3-3-1-1-1-1-1-1-mer

Ligands

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 14 residues within 4Å: Chain A: Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, Q.432 Chain D: S.359, Y.372 Ligands: MG.2 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:Q.172, A:T.173, A:G.174, A:K.175, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430, A:Q.432, D:S.359 ANP.3: 15 residues within 4Å: Chain B: D.170, Q.172, T.173, G.174, K.175, T.176, S.177, E.328, F.357, R.362, Q.430, Q.432 Chain E: R.360, D.363 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Q.172, B:T.173, B:G.174, B:K.175, B:K.175, B:T.176, B:S.177, B:S.177, B:E.328, B:R.362, B:Q.430 pi-Stacking: B:F.357 ANP.5: 16 residues within 4Å: Chain C: R.171, Q.172, T.173, G.174, K.175, T.176, S.177, E.328, F.357, R.362, P.363, Q.430, Q.432 Chain F: S.359, Y.372 Ligands: MG.6 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.172, C:Q.172, C:Q.172, C:T.173, C:T.173, C:G.174, C:K.175, C:K.175, C:T.176, C:S.177, C:S.177, C:E.328, C:Q.430, C:Q.432, F:Y.372 ANP.9: 18 residues within 4Å: Chain B: S.344, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, E.192, R.193, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.10 15 PLIP interactions: 12 interactions with chain F, 3 interactions with chain B Hydrogen bonds: F:G.163, F:V.164, F:G.165, F:K.166, F:K.166, F:K.166, F:T.167, F:V.168, F:R.193, F:R.193, F:Y.349, B:R.373, B:R.373 pi-Stacking: F:Y.349 Salt bridges: B:R.373

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.176, D.269 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.176 MG.4: 4 residues within 4Å: Chain B: T.176, Q.208, D.269 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.176 MG.6: 3 residues within 4Å: Chain C: T.176, D.269 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.176 MG.8: 5 residues within 4Å: Chain D: T.167, E.192, R.193, E.196 Ligands: ADP.7 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.167, D:E.192 MG.10: 5 residues within 4Å: Chain F: T.167, E.192, R.193, D.260 Ligands: ANP.9 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.167

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 14 residues within 4Å: Chain C: S.372, R.373 Chain D: G.163, V.164, G.165, K.166, T.167, V.168, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.8 10 PLIP interactions: 2 interactions with chain C, 8 interactions with chain D Salt bridges: C:R.373, C:R.373, D:K.166 Hydrogen bonds: D:G.163, D:G.165, D:K.166, D:T.167, D:V.168 pi-Stacking: D:Y.349, D:Y.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rees, D.M. et al., The Structure of the Membrane Extrinsic Region of Bovine ATP Synthase. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-11-17

Peptides

ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL: ABC
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL: DEF
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL: G
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL: H
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL: I
ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL: J
ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL: K
ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

D
M

E
N

F
O

G
P

H
Q

I
R

J
W

K
X

L
Z

ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL

ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL

ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL

ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL

ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL

ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL

ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL

ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL

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