SMTL ID : 1h8h.1

Bovine mitochondrial F1-ATPase crystallised in the presence of 5mm AMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-3-3-1-mer

Ligands

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 14 residues within 4Å: Chain A: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, Q.432 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.172, A:Q.172, A:T.173, A:T.173, A:G.174, A:K.175, A:T.176, A:S.177, A:S.177, A:Q.430 Salt bridges: A:K.175, A:K.175 ATP.3: 17 residues within 4Å: Chain B: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain E: R.360, D.363 Ligands: MG.4 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:Q.172, B:Q.172, B:T.173, B:G.174, B:K.175, B:T.176, B:S.177, B:S.177, B:Q.430, E:D.363 Salt bridges: B:K.175, B:K.175 ATP.6: 17 residues within 4Å: Chain C: D.170, R.171, Q.172, T.173, G.174, K.175, T.176, S.177, E.328, F.357, R.362, P.363, Q.430, G.431, Q.432 Chain F: Y.372 Ligands: MG.7 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:Q.172, C:Q.172, C:T.173, C:G.174, C:K.175, C:T.176, C:T.176, C:S.177, C:S.177, C:E.328, C:Q.430, C:Q.432 Water bridges: C:T.176 Salt bridges: C:K.175, C:K.175 ATP.11: 19 residues within 4Å: Chain B: I.343, S.344, V.371, R.373 Chain F: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, R.193, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.12 17 PLIP interactions: 4 interactions with chain B, 13 interactions with chain F Hydrogen bonds: B:S.344, F:G.163, F:V.164, F:G.165, F:K.166, F:T.167, F:T.167, F:V.168, F:Y.349 Salt bridges: B:R.373, B:R.373, B:R.373, F:K.166, F:K.166, F:R.193 pi-Stacking: F:Y.349, F:Y.349

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.176 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.176, H2O.1, H2O.1 MG.4: 3 residues within 4Å: Chain B: T.176, D.269 Ligands: ATP.3 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.176, H2O.2 MG.7: 2 residues within 4Å: Chain C: T.176 Ligands: ATP.6 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:T.176, H2O.3, H2O.3 MG.9: 4 residues within 4Å: Chain D: T.167, R.193, D.260 Ligands: ADP.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.167 MG.12: 4 residues within 4Å: Chain F: T.167, R.193, E.196 Ligands: ATP.11 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:T.167, H2O.4

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain B: M.62, V.129, G.130, Y.244, Y.248, R.304 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.244, B:R.304, B:R.304

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.8: 16 residues within 4Å: Chain C: S.372, R.373 Chain D: G.161, A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, F.422, A.425, F.428, T.429 Ligands: MG.9 14 PLIP interactions: 10 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.163, D:V.164, D:G.165, D:K.166, D:T.167, D:V.168, D:Y.349, C:S.372 Salt bridges: D:K.166, C:R.373, C:R.373 pi-Stacking: D:Y.349, D:Y.349 Water bridges: C:R.373

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 3 residues within 4Å: Chain E: G.163, K.166, T.167 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.163, E:G.165, E:K.166, E:T.167, E:T.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menz, R.I. et al., The Structure and Nucleotide Occupancy of Bovine Mitochondrial F(1)-ATPase are not Influenced by Crystallisation at High Concentrations of Nucleotide. FEBS Lett. (2001)

Release Date

2001-04-15

Peptides

BOVINE MITOCHONDRIAL F1-ATPASE: ABC
BOVINE MITOCHONDRIAL F1-ATPASE: DEF
BOVINE MITOCHONDRIAL F1-ATPASE: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

BOVINE MITOCHONDRIAL F1-ATPASE

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