SMTL ID : 1ogs.1 (1 other biounit)

human acid-beta-glucosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: D.127, F.128, W.179, F.246, Y.313, E.340, W.381, F.397 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.127, A:Y.313, A:Y.313 Water bridges: A:N.234, A:N.234, A:N.234 SO4.2: 7 residues within 4Å: Chain A: R.2, C.4, D.24, S.25, F.26, R.48, M.49 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.4, A:D.24, A:S.25, A:R.48 SO4.3: 3 residues within 4Å: Chain A: R.44, S.465, Y.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.487 Salt bridges: A:R.44 SO4.4: 2 residues within 4Å: Chain A: E.254, R.257 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.254, A:D.258 Salt bridges: A:R.257 SO4.5: 3 residues within 4Å: Chain A: Q.169, R.170, P.428 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.169 Salt bridges: A:R.170 SO4.6: 2 residues within 4Å: Chain A: R.44, S.45 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.45 Salt bridges: A:R.44 SO4.7: 6 residues within 4Å: Chain A: Y.11, S.12, R.353, S.356, W.357, D.358 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:S.12, A:W.357, A:D.358 Water bridges: A:R.359 Salt bridges: A:R.353 SO4.8: 3 residues within 4Å: Chain A: T.63, G.64, Q.440 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.440 Water bridges: A:L.65 SO4.9: 5 residues within 4Å: Chain A: K.79, W.228, R.277, H.306, E.429 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.228, A:E.429 Salt bridges: A:K.79, A:R.277, A:H.306 SO4.10: 2 residues within 4Å: Chain A: R.329, L.330 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.329

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 4 residues within 4Å: Chain A: I.5, N.19, T.21, Y.22 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.21 Hydrogen bonds: A:A.20, A:T.21, A:T.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dvir, H. et al., X-Ray Structure of Human Acid-Beta-Glucosidase, the Defective Enzyme in Gaucher Disease. Embo Rep. (2003)

Release Date

2003-07-03

Peptides

Glucosylceramidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucosylceramidase

Related Entries With Identical Sequence