SMTL ID : 2j25.2 (1 other biounit)

Partially deglycosylated glucoceramidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 4 residues within 4Å: Chain A: I.5, N.19, T.21, Y.22 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.22

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 1 residues within 4Å: Chain A: N.59 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 2 residues within 4Å: Chain A: T.138, N.146 No protein-ligand interaction detected (PLIP)

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: K.79, W.228, R.277, H.306, E.429 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.228 Salt bridges: A:K.79, A:R.277, A:H.306 SO4.5: 3 residues within 4Å: Chain A: R.44, S.465, Y.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.487 Salt bridges: A:R.44 SO4.6: 2 residues within 4Å: Chain A: R.44, S.45 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.44 SO4.7: 6 residues within 4Å: Chain A: Y.11, S.12, R.353, S.356, W.357, D.358 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:S.12, A:W.357, A:D.358 Salt bridges: A:R.353 SO4.8: 4 residues within 4Å: Chain A: G.193, K.194, S.242, G.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.194, A:G.243 SO4.9: 3 residues within 4Å: Chain A: T.187, K.198, G.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.199, A:G.199 SO4.10: 4 residues within 4Å: Chain A: T.154, I.158, P.159, H.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.154 Salt bridges: A:H.162 SO4.11: 4 residues within 4Å: Chain A: Q.169, R.170, P.428, H.451 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.170, A:H.451

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Structural Comparison of Differently Glycosylated Forms of Acid-Beta-Glucosidase, the Defective Enzyme in Gaucher Disease. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-12-06

Peptides

GLUCOSYLCERAMIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLUCOSYLCERAMIDASE

Related Entries With Identical Sequence