- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 64 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.19: 4 residues within 4Å:- Chain A: I.5, N.19, T.21, Y.22
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.19
- Water bridges: A:T.21
NAG.40: 4 residues within 4Å:- Chain B: I.5, N.19, T.21, Y.22
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.19, B:T.21
NAG.59: 3 residues within 4Å:- Chain C: I.5, N.19, Y.22
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.19
- Water bridges: C:N.19, C:T.21
NAG.74: 4 residues within 4Å:- Chain D: I.5, N.19, T.21, Y.22
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.19, D:T.21
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.20: 8 residues within 4Å:- Chain A: D.127, F.128, W.179, N.234, E.235, E.340, W.381, F.397
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.127, A:N.234, A:E.235
GOL.21: 6 residues within 4Å:- Chain A: R.2, D.24, S.25, F.26, R.48, M.49
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.24, A:D.24
- Water bridges: A:C.4, A:K.413
GOL.42: 10 residues within 4Å:- Chain B: R.2, P.3, C.4, D.24, S.25, F.26, R.48, M.49, Y.418
- Ligands: GOL.43
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.2, B:C.4
- Water bridges: B:K.413
GOL.43: 6 residues within 4Å:- Chain B: F.26, Y.40, M.49, E.50, L.51
- Ligands: GOL.42
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.51
GOL.60: 7 residues within 4Å:- Chain C: D.127, F.128, W.179, E.235, E.340, W.381, F.397
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:W.179, C:E.235
- Water bridges: C:N.234
- 2 x IFM: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE(Non-covalent)
IFM.41: 12 residues within 4Å:- Chain B: D.127, F.128, W.179, N.234, E.235, F.246, Y.313, E.340, C.342, S.345, W.381, N.396
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.127, B:D.127, B:E.340, B:S.345, B:N.396
- Water bridges: B:Q.284
IFM.75: 11 residues within 4Å:- Chain D: D.127, F.128, W.179, N.234, E.235, F.246, Y.313, E.340, C.342, W.381, N.396
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.127, D:D.127, D:E.235, D:N.396, D:N.396
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lieberman, R.L. et al., Effects of pH and iminosugar pharmacological chaperones on lysosomal glycosidase structure and stability. Biochemistry (2009)
- Release Date
- 2009-05-05
- Peptides
- Glucosylceramidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
SMTL ID : 3gxf.1 (1 other biounit)
Crystal structure of acid-beta-glucosidase with isofagomine at neutral pH
Glucosylceramidase
Toggle Identical (ABCD)Related Entries With Identical Sequence
1ogs.1 | 1ogs.2 | 1y7v.1 | 1y7v.2 | 1y7v.3 | 1y7v.4 | 1y7v.5 | 1y7v.6 | 2f61.1 | 2f61.2 | 2j25.1 | 2j25.2 | 2nsx.1 | 2nsx.2 | 2nsx.3 | 2nsx.4 | 2nsx.5 | 2nsx.6 | 2nsx.7 | 2nsx.8 | 2nsx.9 | 2nt0.1 | 2nt0.2 | 2nt0.3 | 2nt0.4 | 2nt1.1 | 2nt1.2 | 2nt1.3 | 2nt1.4 | 2nt1.5 more...less...3gxd.1 | 3gxf.2 | 3gxi.1 | 3gxi.2 | 3gxi.3 | 3gxi.4 | 3gxm.1 | 3gxm.2 | 3gxm.3 | 3gxm.4 | 3rik.1 | 3rik.2 | 3ril.1 | 3ril.2 | 6moz.1 | 6moz.2 | 6q1n.1 | 6q1n.2 | 6q1p.1 | 6q1p.2 | 6q1p.3 | 6q6k.1 | 6q6l.1 | 6q6n.1 | 6tjj.1 | 6tjj.2 | 6ytp.1 | 6ytp.2 | 6yut.1 | 6yut.2 | 6yv3.1 | 6yv3.2 | 6z39.1 | 8p3e.1 | 8p41.1 | 8p41.2