- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 26 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: E.254, R.257
Ligand excluded by PLIPSO4.3: 2 residues within 4Å:- Chain A: R.44, S.45
Ligand excluded by PLIPSO4.4: 7 residues within 4Å:- Chain A: Y.11, S.12, R.353, S.356, W.357, D.358
- Chain D: S.242
Ligand excluded by PLIPSO4.5: 3 residues within 4Å:- Chain A: T.63, G.64, Q.440
Ligand excluded by PLIPSO4.6: 4 residues within 4Å:- Chain A: K.79, W.228, R.277, H.306
Ligand excluded by PLIPSO4.7: 2 residues within 4Å:- Chain A: H.290, K.293
Ligand excluded by PLIPSO4.8: 1 residues within 4Å:- Chain A: R.329
Ligand excluded by PLIPSO4.11: 2 residues within 4Å:- Chain B: E.254, R.257
Ligand excluded by PLIPSO4.12: 2 residues within 4Å:- Chain B: R.44, S.45
Ligand excluded by PLIPSO4.13: 7 residues within 4Å:- Chain B: Y.11, S.12, R.353, S.356, W.357, D.358
- Chain C: S.242
Ligand excluded by PLIPSO4.14: 3 residues within 4Å:- Chain B: T.63, G.64, Q.440
Ligand excluded by PLIPSO4.15: 4 residues within 4Å:- Chain B: K.79, W.228, R.277, H.306
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain B: H.290, K.293
Ligand excluded by PLIPSO4.17: 1 residues within 4Å:- Chain B: R.329
Ligand excluded by PLIPSO4.20: 6 residues within 4Å:- Chain C: R.285, W.312, L.314, H.365, S.366, T.369
Ligand excluded by PLIPSO4.21: 4 residues within 4Å:- Chain C: K.79, W.228, R.277, H.306
Ligand excluded by PLIPSO4.22: 6 residues within 4Å:- Chain C: P.3, C.4, G.46, R.47, R.48, E.50
Ligand excluded by PLIPSO4.23: 2 residues within 4Å:- Chain C: R.44, S.45
Ligand excluded by PLIPSO4.24: 4 residues within 4Å:- Chain C: G.193, K.194, S.242, G.243
Ligand excluded by PLIPSO4.25: 6 residues within 4Å:- Chain C: Y.11, S.12, R.353, S.356, W.357, D.358
Ligand excluded by PLIPSO4.28: 6 residues within 4Å:- Chain D: R.285, W.312, L.314, H.365, S.366, T.369
Ligand excluded by PLIPSO4.29: 4 residues within 4Å:- Chain D: K.79, W.228, R.277, H.306
Ligand excluded by PLIPSO4.30: 6 residues within 4Å:- Chain D: P.3, C.4, G.46, R.47, R.48, E.50
Ligand excluded by PLIPSO4.31: 2 residues within 4Å:- Chain D: R.44, S.45
Ligand excluded by PLIPSO4.32: 4 residues within 4Å:- Chain D: G.193, K.194, S.242, G.243
Ligand excluded by PLIPSO4.33: 6 residues within 4Å:- Chain D: Y.11, S.12, R.353, S.356, W.357, D.358
Ligand excluded by PLIP- 4 x INS: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE(Covalent)
INS.9: 11 residues within 4Å:- Chain A: D.127, F.128, W.179, N.234, E.235, F.246, Y.313, E.340, C.342, W.381, N.396
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:E.340
- Hydrogen bonds: A:D.127, A:W.179, A:N.234, A:E.235, A:Y.313, A:Y.313, A:N.396
INS.18: 11 residues within 4Å:- Chain B: D.127, F.128, W.179, N.234, E.235, F.246, Y.313, E.340, C.342, W.381, N.396
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:E.340
- Hydrogen bonds: B:D.127, B:W.179, B:N.234, B:E.235, B:Y.313, B:N.396
INS.26: 11 residues within 4Å:- Chain C: D.127, F.128, W.179, N.234, E.235, F.246, Y.313, E.340, C.342, W.381, N.396
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:E.340
- Hydrogen bonds: C:D.127, C:W.179, C:N.234, C:E.235, C:Y.313, C:N.396
- Water bridges: C:H.311
INS.34: 11 residues within 4Å:- Chain D: D.127, F.128, W.179, N.234, E.235, F.246, Y.313, E.340, C.342, W.381, N.396
9 PLIP interactions:9 interactions with chain D- Hydrophobic interactions: D:E.340
- Hydrogen bonds: D:D.127, D:W.179, D:N.234, D:E.235, D:Y.313, D:Y.313, D:N.396
- Water bridges: D:E.235
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Premkumar, L. et al., X-ray structure of human acid-beta-glucosidase covalently bound to conduritol-B-epoxide. Implications for Gaucher disease. J.Biol.Chem. (2005)
- Release Date
- 2005-04-12
- Peptides
- Glucosylceramidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B
SMTL ID : 1y7v.4 (5 other biounits)
X-ray structure of human acid-beta-glucosidase covalently bound to conduritol B epoxide
Glucosylceramidase
Toggle Identical (ABCD)Related Entries With Identical Sequence
1ogs.1 | 1ogs.2 | 1y7v.1 | 1y7v.2 | 1y7v.3 | 1y7v.5 | 1y7v.6 | 2f61.1 | 2f61.2 | 2j25.1 | 2j25.2 | 2nsx.1 | 2nsx.2 | 2nsx.3 | 2nsx.4 | 2nsx.5 | 2nsx.6 | 2nsx.7 | 2nsx.8 | 2nsx.9 | 2nt0.1 | 2nt0.2 | 2nt0.3 | 2nt0.4 | 2nt1.1 | 2nt1.2 | 2nt1.3 | 2nt1.4 | 2nt1.5 | 3gxd.1 more...less...3gxf.1 | 3gxf.2 | 3gxi.1 | 3gxi.2 | 3gxi.3 | 3gxi.4 | 3gxm.1 | 3gxm.2 | 3gxm.3 | 3gxm.4 | 3rik.1 | 3rik.2 | 3ril.1 | 3ril.2 | 6moz.1 | 6moz.2 | 6q1n.1 | 6q1n.2 | 6q1p.1 | 6q1p.2 | 6q1p.3 | 6q6k.1 | 6q6l.1 | 6q6n.1 | 6tjj.1 | 6tjj.2 | 6ytp.1 | 6ytp.2 | 6yut.1 | 6yut.2 | 6yv3.1 | 6yv3.2 | 6z39.1 | 8p3e.1 | 8p41.1 | 8p41.2