- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: Y.11, S.12, R.353, S.356, W.357, D.358
11 PLIP interactions:1 interactions with chain B, 10 interactions with chain A- Water bridges: B:S.242, A:S.12, A:R.353, A:R.353, A:R.353, A:D.358
- Hydrogen bonds: A:S.12, A:S.12, A:W.357, A:D.358
- Salt bridges: A:R.353
SO4.3: 3 residues within 4Å:- Chain A: T.63, G.64, Q.440
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.63, A:Q.440
SO4.4: 4 residues within 4Å:- Chain A: K.79, W.228, R.277, H.306
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.228
- Salt bridges: A:K.79, A:R.277, A:H.306
SO4.5: 5 residues within 4Å:- Chain A: Y.11, W.348, E.349, Q.350, R.353
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.11, A:Q.350
- Salt bridges: A:R.353
SO4.6: 3 residues within 4Å:- Chain A: R.44, S.465, Y.487
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.487
- Water bridges: A:S.465, A:S.465
- Salt bridges: A:R.44
SO4.7: 3 residues within 4Å:- Chain A: E.254, R.257
- Chain B: K.441
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Salt bridges: B:K.441, A:R.257
- Water bridges: A:E.254, A:R.257
SO4.8: 2 residues within 4Å:- Chain A: H.290, K.293
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:H.290, A:K.293
SO4.9: 2 residues within 4Å:- Chain A: R.44, S.45
6 PLIP interactions:6 interactions with chain A- Water bridges: A:R.44, A:S.45, A:S.45, A:S.465, A:G.486
- Salt bridges: A:R.44
SO4.11: 7 residues within 4Å:- Chain A: S.242
- Chain B: Y.11, S.12, R.353, S.356, W.357, D.358
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.12, B:S.12, B:S.12, B:W.357, B:D.358, A:S.242
- Water bridges: B:R.353, B:S.356
- Salt bridges: B:R.353
SO4.12: 4 residues within 4Å:- Chain B: G.193, K.194, S.242, G.243
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.194, B:G.243
SO4.13: 4 residues within 4Å:- Chain B: K.79, W.228, R.277, H.306
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:W.228
- Water bridges: B:R.277, B:R.277, B:E.429
- Salt bridges: B:K.79, B:R.277, B:H.306
SO4.14: 5 residues within 4Å:- Chain B: Q.226, T.272, H.273, N.275, V.276
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:Q.226
- Water bridges: B:F.227, B:T.272, B:H.273, B:N.275, B:N.275, B:N.275
- Salt bridges: B:H.273
SO4.15: 2 residues within 4Å:- Chain B: R.44, S.45
3 PLIP interactions:3 interactions with chain B- Water bridges: B:S.45, B:S.45
- Salt bridges: B:R.44
SO4.16: 3 residues within 4Å:- Chain B: R.44, S.465, Y.487
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.487
- Salt bridges: B:R.44
SO4.17: 3 residues within 4Å:- Chain B: R.277, V.305, H.306
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:V.305
- Water bridges: B:R.277, B:H.306
- Salt bridges: B:R.277, B:H.306
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lieberman, R.L. et al., Effects of pH and iminosugar pharmacological chaperones on lysosomal glycosidase structure and stability. Biochemistry (2009)
- Release Date
- 2009-05-05
- Peptides
- Glucosylceramidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 3gxm.3 (3 other biounits)
Crystal structure of acid-beta-glucosidase at pH 4.5, phosphate crystallization condition
Glucosylceramidase
Toggle Identical (AB)Related Entries With Identical Sequence
1ogs.1 | 1ogs.2 | 1y7v.1 | 1y7v.2 | 1y7v.3 | 1y7v.4 | 1y7v.5 | 1y7v.6 | 2f61.1 | 2f61.2 | 2j25.1 | 2j25.2 | 2nsx.1 | 2nsx.2 | 2nsx.3 | 2nsx.4 | 2nsx.5 | 2nsx.6 | 2nsx.7 | 2nsx.8 | 2nsx.9 | 2nt0.1 | 2nt0.2 | 2nt0.3 | 2nt0.4 | 2nt1.1 | 2nt1.2 | 2nt1.3 | 2nt1.4 | 2nt1.5 more...less...3gxd.1 | 3gxf.1 | 3gxf.2 | 3gxi.1 | 3gxi.2 | 3gxi.3 | 3gxi.4 | 3gxm.1 | 3gxm.2 | 3gxm.4 | 3rik.1 | 3rik.2 | 3ril.1 | 3ril.2 | 6moz.1 | 6moz.2 | 6q1n.1 | 6q1n.2 | 6q1p.1 | 6q1p.2 | 6q1p.3 | 6q6k.1 | 6q6l.1 | 6q6n.1 | 6tjj.1 | 6tjj.2 | 6ytp.1 | 6ytp.2 | 6yut.1 | 6yut.2 | 6yv3.1 | 6yv3.2 | 6z39.1 | 8p3e.1 | 8p41.1 | 8p41.2