SMTL ID : 2j25.1 (1 other biounit)

Partially deglycosylated glucoceramidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: I.5, N.19, Y.22 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: T.138, N.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.138, A:N.146

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: Y.11, S.12, R.353, S.356, W.357, D.358 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:S.12, A:W.357, A:D.358 Salt bridges: A:R.353 SO4.4: 4 residues within 4Å: Chain A: K.79, W.228, R.277, H.306 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.228 Salt bridges: A:K.79, A:R.277, A:H.306 SO4.5: 4 residues within 4Å: Chain A: E.111, R.170, P.428, H.451 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.170, A:H.451 SO4.6: 2 residues within 4Å: Chain A: R.44, S.45 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.44 SO4.7: 3 residues within 4Å: Chain A: T.63, G.64, Q.440 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.440 SO4.8: 5 residues within 4Å: Chain A: Y.11, W.348, E.349, Q.350, R.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.350, A:Q.350 Salt bridges: A:R.353 SO4.9: 2 residues within 4Å: Chain A: R.44, Y.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.487 Salt bridges: A:R.44 SO4.10: 2 residues within 4Å: Chain A: E.254, R.257 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.257 SO4.11: 3 residues within 4Å: Chain A: T.187, K.198, G.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.199 Salt bridges: A:K.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Structural Comparison of Differently Glycosylated Forms of Acid-Beta-Glucosidase, the Defective Enzyme in Gaucher Disease. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-12-06

Peptides

GLUCOSYLCERAMIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCOSYLCERAMIDASE

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