SMTL ID : 1piv.5 (4 other biounits)

BINDING OF THE ANTIVIRAL DRUG WIN51711 TO THE SABIN STRAIN OF TYPE 3 POLIOVIRUS: STRUCTURAL COMPARISON WITH DRUG BINDING IN RHINOVIRUS 14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-15-15-15-15-mer

Ligands

15 x ILE- SER- GLU- VAL: POLIOVIRUS TYPE 3 (SUBUNIT VP1)(Non-covalent)

ILE-SER-GLU-VAL.1: 4 residues within 4Å: Chain D: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:A.2, D:Q.3, D:V.4, D:V.4 ILE-SER-GLU-VAL.4: 4 residues within 4Å: Chain H: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:A.2, H:Q.3, H:V.4, H:V.4 ILE-SER-GLU-VAL.7: 4 residues within 4Å: Chain L: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain L Hydrogen bonds: L:A.2, L:Q.3, L:V.4, L:V.4 ILE-SER-GLU-VAL.10: 4 residues within 4Å: Chain P: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain P Hydrogen bonds: P:A.2, P:Q.3, P:V.4, P:V.4 ILE-SER-GLU-VAL.13: 4 residues within 4Å: Chain T: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain T Hydrogen bonds: T:A.2, T:Q.3, T:V.4, T:V.4 ILE-SER-GLU-VAL.16: 4 residues within 4Å: Chain X: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain X Hydrogen bonds: X:A.2, X:Q.3, X:V.4, X:V.4 ILE-SER-GLU-VAL.19: 4 residues within 4Å: Chain 1: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain 1 Hydrogen bonds: 1:A.2, 1:Q.3, 1:V.4, 1:V.4 ILE-SER-GLU-VAL.22: 4 residues within 4Å: Chain 5: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain 5 Hydrogen bonds: 5:A.2, 5:Q.3, 5:V.4, 5:V.4 ILE-SER-GLU-VAL.25: 4 residues within 4Å: Chain 9: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain 9 Hydrogen bonds: 9:A.2, 9:Q.3, 9:V.4, 9:V.4 ILE-SER-GLU-VAL.28: 4 residues within 4Å: Chain d: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain d Hydrogen bonds: d:A.2, d:Q.3, d:V.4, d:V.4 ILE-SER-GLU-VAL.31: 4 residues within 4Å: Chain h: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain h Hydrogen bonds: h:A.2, h:Q.3, h:V.4, h:V.4 ILE-SER-GLU-VAL.34: 4 residues within 4Å: Chain l: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain l Hydrogen bonds: l:A.2, l:Q.3, l:V.4, l:V.4 ILE-SER-GLU-VAL.37: 4 residues within 4Å: Chain p: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain p Hydrogen bonds: p:A.2, p:Q.3, p:V.4, p:V.4 ILE-SER-GLU-VAL.40: 4 residues within 4Å: Chain t: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain t Hydrogen bonds: t:A.2, t:Q.3, t:V.4, t:V.4 ILE-SER-GLU-VAL.43: 4 residues within 4Å: Chain x: A.2, Q.3, V.4, S.5 4 PLIP interactions: 4 interactions with chain x Hydrogen bonds: x:A.2, x:Q.3, x:V.4, x:V.4

15 x W71: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE(Non-covalent)

W71.2: 17 residues within 4Å: Chain A: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain C: A.24 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.111, A:F.133, A:Y.158, A:Y.158, A:Y.158, A:I.193, A:V.195, A:V.195, A:F.237, A:F.237, A:F.237, A:L.240 pi-Stacking: A:Y.111 W71.5: 17 residues within 4Å: Chain E: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain G: A.24 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:Y.111, E:F.133, E:Y.158, E:Y.158, E:Y.158, E:I.193, E:V.195, E:V.195, E:F.237, E:F.237, E:F.237, E:L.240 pi-Stacking: E:Y.111 W71.8: 17 residues within 4Å: Chain I: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain K: A.24 13 PLIP interactions: 13 interactions with chain I Hydrophobic interactions: I:Y.111, I:F.133, I:Y.158, I:Y.158, I:Y.158, I:I.193, I:V.195, I:V.195, I:F.237, I:F.237, I:F.237, I:L.240 pi-Stacking: I:Y.111 W71.11: 17 residues within 4Å: Chain M: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain O: A.24 13 PLIP interactions: 13 interactions with chain M Hydrophobic interactions: M:Y.111, M:F.133, M:Y.158, M:Y.158, M:Y.158, M:I.193, M:V.195, M:V.195, M:F.237, M:F.237, M:F.237, M:L.240 pi-Stacking: M:Y.111 W71.14: 17 residues within 4Å: Chain Q: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain S: A.24 13 PLIP interactions: 13 interactions with chain Q Hydrophobic interactions: Q:Y.111, Q:F.133, Q:Y.158, Q:Y.158, Q:Y.158, Q:I.193, Q:V.195, Q:V.195, Q:F.237, Q:F.237, Q:F.237, Q:L.240 pi-Stacking: Q:Y.111 W71.17: 17 residues within 4Å: Chain U: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain W: A.24 13 PLIP interactions: 13 interactions with chain U Hydrophobic interactions: U:Y.111, U:F.133, U:Y.158, U:Y.158, U:Y.158, U:I.193, U:V.195, U:V.195, U:F.237, U:F.237, U:F.237, U:L.240 pi-Stacking: U:Y.111 W71.20: 17 residues within 4Å: Chain 0: A.24 Chain Y: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 13 PLIP interactions: 13 interactions with chain Y Hydrophobic interactions: Y:Y.111, Y:F.133, Y:Y.158, Y:Y.158, Y:Y.158, Y:I.193, Y:V.195, Y:V.195, Y:F.237, Y:F.237, Y:F.237, Y:L.240 pi-Stacking: Y:Y.111 W71.23: 17 residues within 4Å: Chain 2: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain 4: A.24 13 PLIP interactions: 13 interactions with chain 2 Hydrophobic interactions: 2:Y.111, 2:F.133, 2:Y.158, 2:Y.158, 2:Y.158, 2:I.193, 2:V.195, 2:V.195, 2:F.237, 2:F.237, 2:F.237, 2:L.240 pi-Stacking: 2:Y.111 W71.26: 17 residues within 4Å: Chain 6: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain 8: A.24 13 PLIP interactions: 13 interactions with chain 6 Hydrophobic interactions: 6:Y.111, 6:F.133, 6:Y.158, 6:Y.158, 6:Y.158, 6:I.193, 6:V.195, 6:V.195, 6:F.237, 6:F.237, 6:F.237, 6:L.240 pi-Stacking: 6:Y.111 W71.29: 17 residues within 4Å: Chain a: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain c: A.24 13 PLIP interactions: 13 interactions with chain a Hydrophobic interactions: a:Y.111, a:F.133, a:Y.158, a:Y.158, a:Y.158, a:I.193, a:V.195, a:V.195, a:F.237, a:F.237, a:F.237, a:L.240 pi-Stacking: a:Y.111 W71.32: 17 residues within 4Å: Chain e: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain g: A.24 13 PLIP interactions: 13 interactions with chain e Hydrophobic interactions: e:Y.111, e:F.133, e:Y.158, e:Y.158, e:Y.158, e:I.193, e:V.195, e:V.195, e:F.237, e:F.237, e:F.237, e:L.240 pi-Stacking: e:Y.111 W71.35: 17 residues within 4Å: Chain i: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain k: A.24 13 PLIP interactions: 13 interactions with chain i Hydrophobic interactions: i:Y.111, i:F.133, i:Y.158, i:Y.158, i:Y.158, i:I.193, i:V.195, i:V.195, i:F.237, i:F.237, i:F.237, i:L.240 pi-Stacking: i:Y.111 W71.38: 17 residues within 4Å: Chain m: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain o: A.24 13 PLIP interactions: 13 interactions with chain m Hydrophobic interactions: m:Y.111, m:F.133, m:Y.158, m:Y.158, m:Y.158, m:I.193, m:V.195, m:V.195, m:F.237, m:F.237, m:F.237, m:L.240 pi-Stacking: m:Y.111 W71.41: 17 residues within 4Å: Chain q: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain s: A.24 13 PLIP interactions: 13 interactions with chain q Hydrophobic interactions: q:Y.111, q:F.133, q:Y.158, q:Y.158, q:Y.158, q:I.193, q:V.195, q:V.195, q:F.237, q:F.237, q:F.237, q:L.240 pi-Stacking: q:Y.111 W71.44: 17 residues within 4Å: Chain u: I.109, Y.111, F.129, F.133, F.135, I.156, Y.158, P.180, S.181, I.182, I.193, V.195, V.198, Y.204, F.237, L.240 Chain w: A.24 13 PLIP interactions: 13 interactions with chain u Hydrophobic interactions: u:Y.111, u:F.133, u:Y.158, u:Y.158, u:Y.158, u:I.193, u:V.195, u:V.195, u:F.237, u:F.237, u:F.237, u:L.240 pi-Stacking: u:Y.111

15 x MYR: MYRISTIC ACID(Covalent)

MYR.3: 10 residues within 4Å: Chain D: G.1, A.2, Y.31 Chain H: V.4, T.27, I.29, Y.31 Chain O: L.2 Ligands: MYR.6, MYR.15 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H Hydrogen bonds: D:A.2, H:T.27 MYR.6: 10 residues within 4Å: Chain H: G.1, A.2, Y.31 Chain L: V.4, T.27, I.29, Y.31 Chain S: L.2 Ligands: MYR.3, MYR.9 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:A.2 MYR.9: 10 residues within 4Å: Chain C: L.2 Chain L: G.1, A.2, Y.31 Chain P: V.4, T.27, I.29, Y.31 Ligands: MYR.6, MYR.12 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:A.2 MYR.12: 10 residues within 4Å: Chain G: L.2 Chain P: G.1, A.2, Y.31 Chain T: V.4, T.27, I.29, Y.31 Ligands: MYR.9, MYR.15 2 PLIP interactions: 1 interactions with chain T, 1 interactions with chain P Hydrogen bonds: T:T.27, P:A.2 MYR.15: 10 residues within 4Å: Chain D: V.4, T.27, I.29, Y.31 Chain K: L.2 Chain T: G.1, A.2, Y.31 Ligands: MYR.3, MYR.12 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain T Hydrogen bonds: D:T.27, T:A.2 MYR.18: 10 residues within 4Å: Chain 1: V.4, T.27, I.29, Y.31 Chain 8: L.2 Chain X: G.1, A.2, Y.31 Ligands: MYR.21, MYR.30 1 PLIP interactions: 1 interactions with chain X Hydrogen bonds: X:A.2 MYR.21: 10 residues within 4Å: Chain 1: G.1, A.2, Y.31 Chain 5: V.4, T.27, I.29, Y.31 Ligands: MYR.18, MYR.24 Chain c: L.2 2 PLIP interactions: 1 interactions with chain 5, 1 interactions with chain 1 Hydrogen bonds: 5:T.27, 1:A.2 MYR.24: 10 residues within 4Å: Chain 5: G.1, A.2, Y.31 Chain 9: V.4, T.27, I.29, Y.31 Chain W: L.2 Ligands: MYR.21, MYR.27 2 PLIP interactions: 1 interactions with chain 9, 1 interactions with chain 5 Hydrogen bonds: 9:T.27, 5:A.2 MYR.27: 10 residues within 4Å: Chain 0: L.2 Chain 9: G.1, A.2, Y.31 Ligands: MYR.24, MYR.30 Chain d: V.4, T.27, I.29, Y.31 1 PLIP interactions: 1 interactions with chain 9 Hydrogen bonds: 9:A.2 MYR.30: 10 residues within 4Å: Chain 4: L.2 Chain X: V.4, T.27, I.29, Y.31 Ligands: MYR.18, MYR.27 Chain d: G.1, A.2, Y.31 1 PLIP interactions: 1 interactions with chain d Hydrogen bonds: d:A.2 MYR.33: 10 residues within 4Å: Ligands: MYR.36, MYR.45 Chain h: G.1, A.2, Y.31 Chain l: V.4, T.27, I.29, Y.31 Chain s: L.2 2 PLIP interactions: 1 interactions with chain l, 1 interactions with chain h Hydrogen bonds: l:T.27, h:A.2 MYR.36: 10 residues within 4Å: Ligands: MYR.33, MYR.39 Chain l: G.1, A.2, Y.31 Chain p: V.4, T.27, I.29, Y.31 Chain w: L.2 2 PLIP interactions: 1 interactions with chain p, 1 interactions with chain l Hydrogen bonds: p:T.27, l:A.2 MYR.39: 10 residues within 4Å: Ligands: MYR.36, MYR.42 Chain g: L.2 Chain p: G.1, A.2, Y.31 Chain t: V.4, T.27, I.29, Y.31 1 PLIP interactions: 1 interactions with chain p Hydrogen bonds: p:A.2 MYR.42: 10 residues within 4Å: Ligands: MYR.39, MYR.45 Chain k: L.2 Chain t: G.1, A.2, Y.31 Chain x: V.4, T.27, I.29, Y.31 1 PLIP interactions: 1 interactions with chain t Hydrogen bonds: t:A.2 MYR.45: 10 residues within 4Å: Ligands: MYR.33, MYR.42 Chain h: V.4, T.27, I.29, Y.31 Chain o: L.2 Chain x: G.1, A.2, Y.31 2 PLIP interactions: 1 interactions with chain h, 1 interactions with chain x Hydrogen bonds: h:T.27, x:A.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiremath, C.N. et al., Binding of the antiviral drug WIN51711 to the sabin strain of type 3 poliovirus: structural comparison with drug binding in rhinovirus 14. Acta Crystallogr.,Sect.D (1995)

Release Date

1995-06-03

Peptides

POLIOVIRUS TYPE 3 (SUBUNIT VP1): AEIMQUY26aeimqu
POLIOVIRUS TYPE 3 (SUBUNIT VP2): BFJNRVZ37bfjnrv
POLIOVIRUS TYPE 3 (SUBUNIT VP3): CGKOSW048cgkosw
POLIOVIRUS TYPE 3 (SUBUNIT VP4): DHLPTX159dhlptx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

Y
1

2
1

6
1

a
1

e
1

i
1

m
1

q
1

u
1

B
2

F
2

J
2

N
2

R
2

V
2

Z
2

3
2

7
2

b
2

f
2

j
2

n
2

r
2

v
2

C
3

G
3

K
3

O
3

S
3

W
3

0
3

4
3

8
3

c
3

g
3

k
3

o
3

s
3

w
3

D
4

H
4

L
4

P
4

T
4

X
4

1
4

5
4

9
4

d
4

h
4

l
4

p
4

t
4

x
4

POLIOVIRUS TYPE 3 (SUBUNIT VP1)

POLIOVIRUS TYPE 3 (SUBUNIT VP2)

POLIOVIRUS TYPE 3 (SUBUNIT VP3)

POLIOVIRUS TYPE 3 (SUBUNIT VP4)

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