- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 15 x ILE- SER- GLU- VAL: POLIOVIRUS TYPE 3, SABIN STRAIN(Non-covalent)
- 15 x SPH: SPHINGOSINE(Non-covalent)
SPH.2: 13 residues within 4Å:- Chain A: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:I.109, A:Y.111, A:F.129, A:F.133, A:Y.158, A:Y.158, A:I.182, A:I.193, A:V.195, A:Y.204, A:F.237, A:F.237, A:F.237
- Hydrogen bonds: A:Y.111, A:S.205, A:S.205
- Water bridges: A:L.200, A:A.203
SPH.5: 13 residues within 4Å:- Chain E: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain E- Hydrophobic interactions: E:I.109, E:Y.111, E:F.129, E:F.133, E:Y.158, E:Y.158, E:I.182, E:I.193, E:V.195, E:Y.204, E:F.237, E:F.237, E:F.237
- Hydrogen bonds: E:Y.111, E:S.205, E:S.205
- Water bridges: E:L.200, E:A.203
SPH.8: 13 residues within 4Å:- Chain I: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain I- Hydrophobic interactions: I:I.109, I:Y.111, I:F.129, I:F.133, I:Y.158, I:Y.158, I:I.182, I:I.193, I:V.195, I:Y.204, I:F.237, I:F.237, I:F.237
- Hydrogen bonds: I:Y.111, I:S.205, I:S.205
- Water bridges: I:L.200, I:A.203
SPH.11: 13 residues within 4Å:- Chain M: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain M- Hydrophobic interactions: M:I.109, M:Y.111, M:F.129, M:F.133, M:Y.158, M:Y.158, M:I.182, M:I.193, M:V.195, M:Y.204, M:F.237, M:F.237, M:F.237
- Hydrogen bonds: M:Y.111, M:S.205, M:S.205
- Water bridges: M:L.200, M:A.203
SPH.14: 13 residues within 4Å:- Chain Q: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain Q- Hydrophobic interactions: Q:I.109, Q:Y.111, Q:F.129, Q:F.133, Q:Y.158, Q:Y.158, Q:I.182, Q:I.193, Q:V.195, Q:Y.204, Q:F.237, Q:F.237, Q:F.237
- Hydrogen bonds: Q:Y.111, Q:S.205, Q:S.205
- Water bridges: Q:L.200, Q:A.203
SPH.17: 13 residues within 4Å:- Chain U: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
17 PLIP interactions:17 interactions with chain U- Hydrophobic interactions: U:I.109, U:Y.111, U:F.129, U:F.133, U:Y.158, U:Y.158, U:I.182, U:I.193, U:V.195, U:Y.204, U:F.237, U:F.237, U:F.237
- Hydrogen bonds: U:S.205, U:S.205
- Water bridges: U:L.200, U:A.203
SPH.20: 13 residues within 4Å:- Chain Y: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain Y- Hydrophobic interactions: Y:I.109, Y:Y.111, Y:F.129, Y:F.133, Y:Y.158, Y:Y.158, Y:I.182, Y:I.193, Y:V.195, Y:Y.204, Y:F.237, Y:F.237, Y:F.237
- Hydrogen bonds: Y:Y.111, Y:S.205, Y:S.205
- Water bridges: Y:L.200, Y:A.203
SPH.23: 13 residues within 4Å:- Chain 2: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain 2- Hydrophobic interactions: 2:I.109, 2:Y.111, 2:F.129, 2:F.133, 2:Y.158, 2:Y.158, 2:I.182, 2:I.193, 2:V.195, 2:Y.204, 2:F.237, 2:F.237, 2:F.237
- Hydrogen bonds: 2:Y.111, 2:S.205, 2:S.205
- Water bridges: 2:L.200, 2:A.203
SPH.26: 13 residues within 4Å:- Chain 6: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain 6- Hydrophobic interactions: 6:I.109, 6:Y.111, 6:F.129, 6:F.133, 6:Y.158, 6:Y.158, 6:I.182, 6:I.193, 6:V.195, 6:Y.204, 6:F.237, 6:F.237, 6:F.237
- Hydrogen bonds: 6:Y.111, 6:S.205, 6:S.205
- Water bridges: 6:L.200, 6:A.203
SPH.29: 13 residues within 4Å:- Chain a: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain a- Hydrophobic interactions: a:I.109, a:Y.111, a:F.129, a:F.133, a:Y.158, a:Y.158, a:I.182, a:I.193, a:V.195, a:Y.204, a:F.237, a:F.237, a:F.237
- Hydrogen bonds: a:Y.111, a:S.205, a:S.205
- Water bridges: a:L.200, a:A.203
SPH.32: 13 residues within 4Å:- Chain e: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
17 PLIP interactions:17 interactions with chain e- Hydrophobic interactions: e:I.109, e:Y.111, e:F.129, e:F.133, e:Y.158, e:Y.158, e:I.182, e:I.193, e:V.195, e:Y.204, e:F.237, e:F.237, e:F.237
- Hydrogen bonds: e:S.205, e:S.205
- Water bridges: e:L.200, e:A.203
SPH.35: 13 residues within 4Å:- Chain i: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain i- Hydrophobic interactions: i:I.109, i:Y.111, i:F.129, i:F.133, i:Y.158, i:Y.158, i:I.182, i:I.193, i:V.195, i:Y.204, i:F.237, i:F.237, i:F.237
- Hydrogen bonds: i:Y.111, i:S.205, i:S.205
- Water bridges: i:L.200, i:A.203
SPH.38: 13 residues within 4Å:- Chain m: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain m- Hydrophobic interactions: m:I.109, m:Y.111, m:F.129, m:F.133, m:Y.158, m:Y.158, m:I.182, m:I.193, m:V.195, m:Y.204, m:F.237, m:F.237, m:F.237
- Hydrogen bonds: m:Y.111, m:S.205, m:S.205
- Water bridges: m:L.200, m:A.203
SPH.41: 13 residues within 4Å:- Chain q: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
17 PLIP interactions:17 interactions with chain q- Hydrophobic interactions: q:I.109, q:Y.111, q:F.129, q:F.133, q:Y.158, q:Y.158, q:I.182, q:I.193, q:V.195, q:Y.204, q:F.237, q:F.237, q:F.237
- Hydrogen bonds: q:S.205, q:S.205
- Water bridges: q:L.200, q:A.203
SPH.44: 13 residues within 4Å:- Chain u: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
17 PLIP interactions:17 interactions with chain u- Hydrophobic interactions: u:I.109, u:Y.111, u:F.129, u:F.133, u:Y.158, u:Y.158, u:I.182, u:I.193, u:V.195, u:Y.204, u:F.237, u:F.237, u:F.237
- Hydrogen bonds: u:S.205, u:S.205
- Water bridges: u:L.200, u:A.203
- 15 x MYR: MYRISTIC ACID(Covalent)
MYR.3: 12 residues within 4Å:- Chain D: G.1, A.2, I.29, Y.31
- Chain H: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain O: L.2
- Ligands: ILE-SER-GLU-VAL.4
4 PLIP interactions:2 interactions with chain H, 2 interactions with chain D- Hydrophobic interactions: H:A.2, D:I.29, D:Y.31
- Hydrogen bonds: H:T.27
MYR.6: 12 residues within 4Å:- Chain H: G.1, A.2, I.29, Y.31
- Chain L: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain S: L.2
- Ligands: ILE-SER-GLU-VAL.7
3 PLIP interactions:1 interactions with chain L, 2 interactions with chain H- Hydrophobic interactions: L:A.2, H:I.29, H:Y.31
MYR.9: 12 residues within 4Å:- Chain C: L.2
- Chain L: G.1, A.2, I.29, Y.31
- Chain P: A.2, V.4, T.27, T.28, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.10
3 PLIP interactions:2 interactions with chain L, 1 interactions with chain P- Hydrophobic interactions: L:I.29, L:Y.31, P:A.2
MYR.12: 12 residues within 4Å:- Chain G: L.2
- Chain P: G.1, A.2, I.29, Y.31
- Chain T: A.2, V.4, T.27, T.28, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.13
4 PLIP interactions:2 interactions with chain P, 2 interactions with chain T- Hydrophobic interactions: P:I.29, P:Y.31, T:A.2
- Hydrogen bonds: T:T.27
MYR.15: 12 residues within 4Å:- Chain D: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain K: L.2
- Chain T: G.1, A.2, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.1
4 PLIP interactions:2 interactions with chain T, 2 interactions with chain D- Hydrophobic interactions: T:I.29, T:Y.31, D:A.2
- Hydrogen bonds: D:T.27
MYR.18: 12 residues within 4Å:- Chain 1: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain 8: L.2
- Chain X: G.1, A.2, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.19
4 PLIP interactions:2 interactions with chain X, 2 interactions with chain 1- Hydrophobic interactions: X:I.29, X:Y.31, 1:A.2
- Hydrogen bonds: 1:T.27
MYR.21: 12 residues within 4Å:- Chain 1: G.1, A.2, I.29, Y.31
- Chain 5: A.2, V.4, T.27, T.28, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.22
- Chain c: L.2
4 PLIP interactions:2 interactions with chain 1, 2 interactions with chain 5- Hydrophobic interactions: 1:I.29, 1:Y.31, 5:A.2
- Hydrogen bonds: 5:T.27
MYR.24: 12 residues within 4Å:- Chain 5: G.1, A.2, I.29, Y.31
- Chain 9: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain W: L.2
- Ligands: ILE-SER-GLU-VAL.25
4 PLIP interactions:2 interactions with chain 9, 2 interactions with chain 5- Hydrophobic interactions: 9:A.2, 5:I.29, 5:Y.31
- Hydrogen bonds: 9:T.27
MYR.27: 12 residues within 4Å:- Chain 0: L.2
- Chain 9: G.1, A.2, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.28
- Chain d: A.2, V.4, T.27, T.28, I.29, Y.31
3 PLIP interactions:2 interactions with chain 9, 1 interactions with chain d- Hydrophobic interactions: 9:I.29, 9:Y.31, d:A.2
MYR.30: 12 residues within 4Å:- Chain 4: L.2
- Chain X: A.2, V.4, T.27, T.28, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.16
- Chain d: G.1, A.2, I.29, Y.31
3 PLIP interactions:2 interactions with chain d, 1 interactions with chain X- Hydrophobic interactions: d:I.29, d:Y.31, X:A.2
MYR.33: 12 residues within 4Å:- Ligands: ILE-SER-GLU-VAL.34
- Chain h: G.1, A.2, I.29, Y.31
- Chain l: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain s: L.2
4 PLIP interactions:2 interactions with chain l, 2 interactions with chain h- Hydrophobic interactions: l:A.2, h:I.29, h:Y.31
- Hydrogen bonds: l:T.27
MYR.36: 12 residues within 4Å:- Ligands: ILE-SER-GLU-VAL.37
- Chain l: G.1, A.2, I.29, Y.31
- Chain p: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain w: L.2
4 PLIP interactions:2 interactions with chain p, 2 interactions with chain l- Hydrophobic interactions: p:A.2, l:I.29, l:Y.31
- Hydrogen bonds: p:T.27
MYR.39: 12 residues within 4Å:- Ligands: ILE-SER-GLU-VAL.40
- Chain g: L.2
- Chain p: G.1, A.2, I.29, Y.31
- Chain t: A.2, V.4, T.27, T.28, I.29, Y.31
3 PLIP interactions:1 interactions with chain t, 2 interactions with chain p- Hydrophobic interactions: t:A.2, p:I.29, p:Y.31
MYR.42: 12 residues within 4Å:- Ligands: ILE-SER-GLU-VAL.43
- Chain k: L.2
- Chain t: G.1, A.2, I.29, Y.31
- Chain x: A.2, V.4, T.27, T.28, I.29, Y.31
3 PLIP interactions:2 interactions with chain t, 1 interactions with chain x- Hydrophobic interactions: t:I.29, t:Y.31, x:A.2
MYR.45: 12 residues within 4Å:- Ligands: ILE-SER-GLU-VAL.31
- Chain h: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain o: L.2
- Chain x: G.1, A.2, I.29, Y.31
4 PLIP interactions:2 interactions with chain x, 2 interactions with chain h- Hydrophobic interactions: x:I.29, x:Y.31, h:A.2
- Hydrogen bonds: h:T.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Syed, R. et al., Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution. To be Published
- Release Date
- 1995-09-15
- Peptides
- POLIOVIRUS TYPE 3, SABIN STRAIN: AEIMQUY26aeimqu
POLIOVIRUS TYPE 3, SABIN STRAIN: BFJNRVZ37bfjnrv
POLIOVIRUS TYPE 3, SABIN STRAIN: CGKOSW048cgkosw
POLIOVIRUS TYPE 3, SABIN STRAIN: DHLPTX159dhlptx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1Y
12
16
1a
1e
1i
1m
1q
1u
1B
2F
2J
2N
2R
2V
2Z
23
27
2b
2f
2j
2n
2r
2v
2C
3G
3K
3O
3S
3W
30
34
38
3c
3g
3k
3o
3s
3w
3D
4H
4L
4P
4T
4X
41
45
49
4d
4h
4l
4p
4t
4x
4
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 15 x ILE- SER- GLU- VAL: POLIOVIRUS TYPE 3, SABIN STRAIN(Non-covalent)
- 15 x SPH: SPHINGOSINE(Non-covalent)
- 15 x MYR: MYRISTIC ACID(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Syed, R. et al., Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution. To be Published
- Release Date
- 1995-09-15
- Peptides
- POLIOVIRUS TYPE 3, SABIN STRAIN: AEIMQUY26aeimqu
POLIOVIRUS TYPE 3, SABIN STRAIN: BFJNRVZ37bfjnrv
POLIOVIRUS TYPE 3, SABIN STRAIN: CGKOSW048cgkosw
POLIOVIRUS TYPE 3, SABIN STRAIN: DHLPTX159dhlptx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1Y
12
16
1a
1e
1i
1m
1q
1u
1B
2F
2J
2N
2R
2V
2Z
23
27
2b
2f
2j
2n
2r
2v
2C
3G
3K
3O
3S
3W
30
34
38
3c
3g
3k
3o
3s
3w
3D
4H
4L
4P
4T
4X
41
45
49
4d
4h
4l
4p
4t
4x
4