SMTL ID : 1pvc.3 (4 other biounits)

REFINEMENT OF THE SABIN STRAIN OF TYPE 3 POLIOVIRUS AT 2.4 ANGSTROMS AND THE CRYSTAL STRUCTURES OF ITS VARIANTS AT 2.9 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x ILE- SER- GLU- VAL: POLIOVIRUS TYPE 3, SABIN STRAIN(Non-covalent)

ILE-SER-GLU-VAL.1: 5 residues within 4Å: Chain D: A.2, Q.3, V.4, S.5, N.25 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:A.2, D:V.4 Hydrogen bonds: D:A.2, D:Q.3, D:V.4, D:V.4, D:S.6, D:N.25 ILE-SER-GLU-VAL.4: 6 residues within 4Å: Chain H: A.2, Q.3, V.4, S.5, N.25 Ligands: MYR.3 9 PLIP interactions: 9 interactions with chain H Hydrophobic interactions: H:A.2, H:V.4 Hydrogen bonds: H:A.2, H:Q.3, H:V.4, H:V.4, H:S.6, H:N.25, H:N.25 ILE-SER-GLU-VAL.7: 6 residues within 4Å: Chain L: A.2, Q.3, V.4, S.5, N.25 Ligands: MYR.12 8 PLIP interactions: 8 interactions with chain L Hydrophobic interactions: L:A.2, L:V.4 Hydrogen bonds: L:A.2, L:Q.3, L:V.4, L:V.4, L:S.6, L:N.25 ILE-SER-GLU-VAL.10: 5 residues within 4Å: Chain P: A.2, Q.3, V.4, S.5, N.25 8 PLIP interactions: 8 interactions with chain P Hydrophobic interactions: P:A.2, P:V.4 Hydrogen bonds: P:A.2, P:Q.3, P:V.4, P:V.4, P:S.6, P:N.25 ILE-SER-GLU-VAL.13: 5 residues within 4Å: Chain T: A.2, Q.3, V.4, S.5, N.25 8 PLIP interactions: 8 interactions with chain T Hydrophobic interactions: T:A.2, T:V.4 Hydrogen bonds: T:A.2, T:Q.3, T:V.4, T:V.4, T:S.6, T:N.25 ILE-SER-GLU-VAL.16: 6 residues within 4Å: Chain X: A.2, Q.3, V.4, S.5, N.25 Ligands: MYR.15 9 PLIP interactions: 9 interactions with chain X Hydrophobic interactions: X:A.2, X:V.4 Hydrogen bonds: X:A.2, X:Q.3, X:V.4, X:V.4, X:S.6, X:N.25, X:N.25

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 13 residues within 4Å: Chain A: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.109, A:Y.111, A:F.129, A:F.133, A:Y.158, A:Y.158, A:I.182, A:I.193, A:V.195, A:Y.204, A:F.237, A:F.237, A:F.237 Hydrogen bonds: A:Y.111, A:S.205, A:S.205 Water bridges: A:L.200, A:A.203 SPH.5: 13 residues within 4Å: Chain E: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237 18 PLIP interactions: 18 interactions with chain E Hydrophobic interactions: E:I.109, E:Y.111, E:F.129, E:F.133, E:Y.158, E:Y.158, E:I.182, E:I.193, E:V.195, E:Y.204, E:F.237, E:F.237, E:F.237 Hydrogen bonds: E:Y.111, E:S.205, E:S.205 Water bridges: E:L.200, E:A.203 SPH.8: 13 residues within 4Å: Chain I: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237 18 PLIP interactions: 18 interactions with chain I Hydrophobic interactions: I:I.109, I:Y.111, I:F.129, I:F.133, I:Y.158, I:Y.158, I:I.182, I:I.193, I:V.195, I:Y.204, I:F.237, I:F.237, I:F.237 Hydrogen bonds: I:Y.111, I:S.205, I:S.205 Water bridges: I:L.200, I:A.203 SPH.11: 13 residues within 4Å: Chain M: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237 18 PLIP interactions: 18 interactions with chain M Hydrophobic interactions: M:I.109, M:Y.111, M:F.129, M:F.133, M:Y.158, M:Y.158, M:I.182, M:I.193, M:V.195, M:Y.204, M:F.237, M:F.237, M:F.237 Hydrogen bonds: M:Y.111, M:S.205, M:S.205 Water bridges: M:L.200, M:A.203 SPH.14: 13 residues within 4Å: Chain Q: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237 18 PLIP interactions: 18 interactions with chain Q Hydrophobic interactions: Q:I.109, Q:Y.111, Q:F.129, Q:F.133, Q:Y.158, Q:Y.158, Q:I.182, Q:I.193, Q:V.195, Q:Y.204, Q:F.237, Q:F.237, Q:F.237 Hydrogen bonds: Q:Y.111, Q:S.205, Q:S.205 Water bridges: Q:L.200, Q:A.203 SPH.17: 13 residues within 4Å: Chain U: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237 18 PLIP interactions: 18 interactions with chain U Hydrophobic interactions: U:I.109, U:Y.111, U:F.129, U:F.133, U:Y.158, U:Y.158, U:I.182, U:I.193, U:V.195, U:Y.204, U:F.237, U:F.237, U:F.237 Hydrogen bonds: U:Y.111, U:S.205, U:S.205 Water bridges: U:L.200, U:A.203

6 x MYR: MYRISTIC ACID(Covalent)

MYR.3: 11 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain H: A.2, V.4, T.27, T.28, I.29, Y.31 Ligands: ILE-SER-GLU-VAL.4 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain H Hydrophobic interactions: D:I.29, D:Y.31, H:A.2 Hydrogen bonds: H:T.27 MYR.6: 4 residues within 4Å: Chain H: G.1, A.2, I.29, Y.31 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:I.29, H:Y.31 MYR.9: 4 residues within 4Å: Chain L: G.1, A.2, I.29, Y.31 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:I.29, L:Y.31 MYR.12: 11 residues within 4Å: Chain L: A.2, V.4, T.27, T.28, I.29, Y.31 Chain P: G.1, A.2, I.29, Y.31 Ligands: ILE-SER-GLU-VAL.7 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain L Hydrophobic interactions: P:I.29, P:Y.31, L:A.2 Hydrogen bonds: L:T.27 MYR.15: 11 residues within 4Å: Chain T: G.1, A.2, I.29, Y.31 Chain X: A.2, V.4, T.27, T.28, I.29, Y.31 Ligands: ILE-SER-GLU-VAL.16 4 PLIP interactions: 2 interactions with chain T, 2 interactions with chain X Hydrophobic interactions: T:I.29, T:Y.31, X:A.2 Hydrogen bonds: X:T.27 MYR.18: 4 residues within 4Å: Chain X: G.1, A.2, I.29, Y.31 2 PLIP interactions: 2 interactions with chain X Hydrophobic interactions: X:I.29, X:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Syed, R. et al., Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution. To be Published

Release Date

1995-09-15

Peptides

POLIOVIRUS TYPE 3, SABIN STRAIN: AEIMQU
POLIOVIRUS TYPE 3, SABIN STRAIN: BFJNRV
POLIOVIRUS TYPE 3, SABIN STRAIN: CGKOSW
POLIOVIRUS TYPE 3, SABIN STRAIN: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

POLIOVIRUS TYPE 3, SABIN STRAIN

POLIOVIRUS TYPE 3, SABIN STRAIN

POLIOVIRUS TYPE 3, SABIN STRAIN

POLIOVIRUS TYPE 3, SABIN STRAIN

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