- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-6-6-6-6-mer
- Ligands
- 6 x ILE- SER- GLU- VAL: POLIOVIRUS TYPE 3, SABIN STRAIN(Non-covalent)
- 6 x SPH: SPHINGOSINE(Non-covalent)
SPH.2: 13 residues within 4Å:- Chain A: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:I.109, A:Y.111, A:F.129, A:F.133, A:Y.158, A:Y.158, A:I.182, A:I.193, A:V.195, A:Y.204, A:F.237, A:F.237, A:F.237
- Hydrogen bonds: A:Y.111, A:S.205, A:S.205
- Water bridges: A:L.200, A:A.203
SPH.5: 13 residues within 4Å:- Chain E: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain E- Hydrophobic interactions: E:I.109, E:Y.111, E:F.129, E:F.133, E:Y.158, E:Y.158, E:I.182, E:I.193, E:V.195, E:Y.204, E:F.237, E:F.237, E:F.237
- Hydrogen bonds: E:Y.111, E:S.205, E:S.205
- Water bridges: E:L.200, E:A.203
SPH.8: 13 residues within 4Å:- Chain I: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain I- Hydrophobic interactions: I:I.109, I:Y.111, I:F.129, I:F.133, I:Y.158, I:Y.158, I:I.182, I:I.193, I:V.195, I:Y.204, I:F.237, I:F.237, I:F.237
- Hydrogen bonds: I:Y.111, I:S.205, I:S.205
- Water bridges: I:L.200, I:A.203
SPH.11: 13 residues within 4Å:- Chain M: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain M- Hydrophobic interactions: M:I.109, M:Y.111, M:F.129, M:F.133, M:Y.158, M:Y.158, M:I.182, M:I.193, M:V.195, M:Y.204, M:F.237, M:F.237, M:F.237
- Hydrogen bonds: M:Y.111, M:S.205, M:S.205
- Water bridges: M:L.200, M:A.203
SPH.14: 13 residues within 4Å:- Chain Q: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain Q- Hydrophobic interactions: Q:I.109, Q:Y.111, Q:F.129, Q:F.133, Q:Y.158, Q:Y.158, Q:I.182, Q:I.193, Q:V.195, Q:Y.204, Q:F.237, Q:F.237, Q:F.237
- Hydrogen bonds: Q:Y.111, Q:S.205, Q:S.205
- Water bridges: Q:L.200, Q:A.203
SPH.17: 13 residues within 4Å:- Chain U: I.109, Y.111, F.129, F.133, Y.158, I.182, I.193, V.195, Y.204, S.205, H.206, M.232, F.237
18 PLIP interactions:18 interactions with chain U- Hydrophobic interactions: U:I.109, U:Y.111, U:F.129, U:F.133, U:Y.158, U:Y.158, U:I.182, U:I.193, U:V.195, U:Y.204, U:F.237, U:F.237, U:F.237
- Hydrogen bonds: U:Y.111, U:S.205, U:S.205
- Water bridges: U:L.200, U:A.203
- 6 x MYR: MYRISTIC ACID(Covalent)
MYR.3: 11 residues within 4Å:- Chain D: G.1, A.2, I.29, Y.31
- Chain H: A.2, V.4, T.27, T.28, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.4
4 PLIP interactions:2 interactions with chain H, 2 interactions with chain D- Hydrophobic interactions: H:A.2, D:I.29, D:Y.31
- Hydrogen bonds: H:T.27
MYR.6: 4 residues within 4Å:- Chain H: G.1, A.2, I.29, Y.31
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:I.29, H:Y.31
MYR.9: 4 residues within 4Å:- Chain L: G.1, A.2, I.29, Y.31
2 PLIP interactions:2 interactions with chain L- Hydrophobic interactions: L:I.29, L:Y.31
MYR.12: 11 residues within 4Å:- Chain L: A.2, V.4, T.27, T.28, I.29, Y.31
- Chain P: G.1, A.2, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.7
4 PLIP interactions:2 interactions with chain L, 2 interactions with chain P- Hydrophobic interactions: L:A.2, P:I.29, P:Y.31
- Hydrogen bonds: L:T.27
MYR.15: 11 residues within 4Å:- Chain T: G.1, A.2, I.29, Y.31
- Chain X: A.2, V.4, T.27, T.28, I.29, Y.31
- Ligands: ILE-SER-GLU-VAL.16
4 PLIP interactions:2 interactions with chain T, 2 interactions with chain X- Hydrophobic interactions: T:I.29, T:Y.31, X:A.2
- Hydrogen bonds: X:T.27
MYR.18: 4 residues within 4Å:- Chain X: G.1, A.2, I.29, Y.31
2 PLIP interactions:2 interactions with chain X- Hydrophobic interactions: X:I.29, X:Y.31
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Syed, R. et al., Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution. To be Published
- Release Date
- 1995-09-15
- Peptides
- POLIOVIRUS TYPE 3, SABIN STRAIN: AEIMQU
POLIOVIRUS TYPE 3, SABIN STRAIN: BFJNRV
POLIOVIRUS TYPE 3, SABIN STRAIN: CGKOSW
POLIOVIRUS TYPE 3, SABIN STRAIN: DHLPTX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1B
2F
2J
2N
2R
2V
2C
3G
3K
3O
3S
3W
3D
4H
4L
4P
4T
4X
4
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-6-6-6-6-mer
- Ligands
- 6 x ILE- SER- GLU- VAL: POLIOVIRUS TYPE 3, SABIN STRAIN(Non-covalent)
- 6 x SPH: SPHINGOSINE(Non-covalent)
- 6 x MYR: MYRISTIC ACID(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Syed, R. et al., Refinement of the Sabin Strain of Type 3 Poliovirus at 2.4 Angstroms and the Crystal Structures of its Variants at 2.9 Angstroms Resolution. To be Published
- Release Date
- 1995-09-15
- Peptides
- POLIOVIRUS TYPE 3, SABIN STRAIN: AEIMQU
POLIOVIRUS TYPE 3, SABIN STRAIN: BFJNRV
POLIOVIRUS TYPE 3, SABIN STRAIN: CGKOSW
POLIOVIRUS TYPE 3, SABIN STRAIN: DHLPTX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1E
1I
1M
1Q
1U
1B
2F
2J
2N
2R
2V
2C
3G
3K
3O
3S
3W
3D
4H
4L
4P
4T
4X
4