SMTL ID : 8e8r.2 (3 other biounits)

9H2 Fab-Sabin poliovirus 3 complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-5-5-mer

Ligands

5 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 14 residues within 4Å: Chain A: I.87, T.88, Y.89, K.90, M.109, F.111, Y.136, I.171, V.173, V.176, D.214, F.215, L.218 Chain C: A.24 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.87, A:I.87, A:Y.89, A:F.111, A:F.111, A:Y.136, A:Y.136, A:Y.136, A:I.171, A:V.173, A:V.173, A:F.215, A:F.215, A:F.215, A:L.218, C:A.24 Hydrogen bonds: A:Y.89 Salt bridges: A:K.90 PLM.2: 14 residues within 4Å: Chain G: I.87, T.88, Y.89, K.90, M.109, F.111, Y.136, I.171, V.173, V.176, D.214, F.215, L.218 Chain I: A.24 18 PLIP interactions: 17 interactions with chain G, 1 interactions with chain I Hydrophobic interactions: G:I.87, G:I.87, G:Y.89, G:F.111, G:F.111, G:Y.136, G:Y.136, G:Y.136, G:I.171, G:V.173, G:V.173, G:F.215, G:F.215, G:F.215, G:L.218, I:A.24 Hydrogen bonds: G:Y.89 Salt bridges: G:K.90 PLM.3: 14 residues within 4Å: Chain M: I.87, T.88, Y.89, K.90, M.109, F.111, Y.136, I.171, V.173, V.176, D.214, F.215, L.218 Chain O: A.24 18 PLIP interactions: 17 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.87, M:I.87, M:Y.89, M:F.111, M:F.111, M:Y.136, M:Y.136, M:Y.136, M:I.171, M:V.173, M:V.173, M:F.215, M:F.215, M:F.215, M:L.218, O:A.24 Hydrogen bonds: M:Y.89 Salt bridges: M:K.90 PLM.4: 14 residues within 4Å: Chain S: I.87, T.88, Y.89, K.90, M.109, F.111, Y.136, I.171, V.173, V.176, D.214, F.215, L.218 Chain U: A.24 18 PLIP interactions: 17 interactions with chain S, 1 interactions with chain U Hydrophobic interactions: S:I.87, S:I.87, S:Y.89, S:F.111, S:F.111, S:Y.136, S:Y.136, S:Y.136, S:I.171, S:V.173, S:V.173, S:F.215, S:F.215, S:F.215, S:L.218, U:A.24 Hydrogen bonds: S:Y.89 Salt bridges: S:K.90 PLM.5: 14 residues within 4Å: Chain 0: A.24 Chain Y: I.87, T.88, Y.89, K.90, M.109, F.111, Y.136, I.171, V.173, V.176, D.214, F.215, L.218 18 PLIP interactions: 17 interactions with chain Y, 1 interactions with chain 0 Hydrophobic interactions: Y:I.87, Y:I.87, Y:Y.89, Y:F.111, Y:F.111, Y:Y.136, Y:Y.136, Y:Y.136, Y:I.171, Y:V.173, Y:V.173, Y:F.215, Y:F.215, Y:F.215, Y:L.218, 0:A.24 Hydrogen bonds: Y:Y.89 Salt bridges: Y:K.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charnesky, A.J. et al., A human monoclonal antibody binds within the poliovirus receptor-binding site to neutralize all three serotypes. Nat Commun (2023)

Release Date

2023-06-21

Peptides

Capsid protein VP1: AGMSY
Capsid protein VP2: BHNTZ
Capsid protein VP3: CIOU0
Capsid protein VP4: DJPV1
9H2 Fab heavy chain: EKQW2
9H2 Fab light chain: FLRX3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

G
1

M
1

S
1

Y
1

B
2

H
2

N
2

T
2

Z
2

C
3

I
3

O
3

U
3

0
3

D
4

J
4

P
4

V
4

1
4

E
H

K
H

Q
H

W
H

2
H

F
L

L
L

R
L

X
L

3
L

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

9H2 Fab heavy chain

9H2 Fab light chain

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