SMTL ID : 1qgl.1

Room temperature structure of concanavalin A complexed to bivalent ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1, H2O.1 MN.4: 4 residues within 4Å: Chain B: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.2, H2O.2

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.1 CA.5: 4 residues within 4Å: Chain B: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.2, H2O.2

1 x EJT: 1,3-DI(N-PROPYLOXY-A-MANNOPYRANOSYL)-CARBOMYL 5-METHYAZIDO-BENZENE(Non-covalent)

EJT.3: 18 residues within 4Å: Chain A: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228 Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228 14 PLIP interactions: 7 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.99, B:L.99 Hydrogen bonds: A:G.98, A:L.99, A:Y.100, A:Y.100, A:Y.100, A:R.228, B:N.14, B:G.98, B:L.99, B:Y.100, B:Y.100, B:R.228

1 x SIN: SUCCINIC ACID(Covalent)

SIN.6: 9 residues within 4Å: Chain A: G.98, L.99, K.101, G.167, S.168 Chain B: L.99, Y.100, K.101, D.203 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.99 Hydrogen bonds: A:G.167, A:S.168, B:L.99, B:K.101 Salt bridges: B:K.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dimick, S.M. et al., On the Meaning of Affinity: Cluster Glycoside Effects and Concanavalin A. J.Am.Chem.Soc. (1999)

Release Date

1999-05-20

Peptides

PROTEIN (SUCCINYLATED CONCANAVALIN A ): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (SUCCINYLATED CONCANAVALIN A )

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