SMTL ID : 3nwk.3 (3 other biounits)

A second C2221 form of concanavalin A (Canavalia ensiformis)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.3 CA.5: 4 residues within 4Å: Chain B: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.6, H2O.6

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.3, H2O.4 MN.6: 4 residues within 4Å: Chain B: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.7, H2O.7

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.14, A:N.14, A:G.98, A:L.99, A:Y.100, A:Y.100 GOL.4: 10 residues within 4Å: Chain A: S.113, L.115, N.124, A.125, L.126, V.179, H.180 Chain B: F.130, Q.137, D.139 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.180, B:Q.137, B:D.139, B:D.139, B:D.139 Water bridges: A:N.124 GOL.7: 4 residues within 4Å: Chain B: N.44, S.201, D.203, S.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.44 Water bridges: B:S.201 GOL.8: 9 residues within 4Å: Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.14, B:N.14, B:G.98, B:L.99, B:Y.100, B:Y.100 GOL.9: 8 residues within 4Å: Chain A: F.130, D.139 Chain B: S.113, N.124, A.125, L.126, V.179, H.180 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.137, A:D.139, B:H.180 Water bridges: B:N.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Foroughi, L.M. et al., Polymer-Induced Heteronucleation for Protein Single Crystal Growth: Structural Elucidation of Bovine Liver Catalase and Concanavalin A Forms. Cryst.Growth Des. (2011)

Release Date

2011-07-13

Peptides

Concanavalin-A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Concanavalin-A

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