- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x M3N: 4-(hydroxymethyl)-1-(alpha-D-mannopyranosyl)-1H-1,2,3-triazole(Non-covalent)
M3N.3: 9 residues within 4Å:- Chain A: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.14, A:G.98, A:L.99, A:Y.100, A:Y.100, A:R.228
- Water bridges: A:R.228
M3N.5: 9 residues within 4Å:- Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.14, B:G.98, B:L.99, B:Y.100, B:Y.100, B:R.228
- Water bridges: B:R.228
M3N.11: 9 residues within 4Å:- Chain C: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:Y.12, C:N.14, C:G.98, C:L.99, C:Y.100, C:Y.100, C:R.228
- Water bridges: C:R.228
M3N.13: 9 residues within 4Å:- Chain D: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:N.14, D:G.98, D:L.99, D:Y.100, D:Y.100, D:R.228
- Water bridges: D:R.228
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 7 residues within 4Å:- Chain A: S.113, L.115, N.124, L.126, V.179, H.180, A.189
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.180
- Water bridges: B:D.139
EDO.8: 7 residues within 4Å:- Chain B: S.113, K.114, L.115, N.124, L.126, V.179, H.180
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.180
- Water bridges: B:A.125, B:P.178, A:D.139
EDO.12: 7 residues within 4Å:- Chain C: S.113, L.115, N.124, L.126, V.179, H.180, A.189
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:H.180
- Water bridges: D:D.139
EDO.16: 7 residues within 4Å:- Chain D: S.113, K.114, L.115, N.124, L.126, V.179, H.180
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain D- Water bridges: C:D.139, D:A.125, D:P.178
- Hydrogen bonds: D:H.180
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Francois-Heude, M. et al., Synthesis of High-Mannose Oligosaccharide Analogues through Click Chemistry: True Functional Mimics of Their Natural Counterparts Against Lectins?. Chemistry (2015)
- Release Date
- 2014-12-17
- Peptides
- Concanavalin-A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
SMTL ID : 4pf5.1
Crystal structure of Concanavalin A complexed with a synthetic derivative of high-mannose chain
Concanavalin-A
Toggle Identical (ABCD)Related Entries With Identical Sequence
1apn.1 | 1bxh.1 | 1c57.1 | 1ces.1 | 1cjp.1 | 1con.1 | 1cvn.1 | 1dq0.1 | 1dq1.1 | 1dq2.1 | 1dq4.1 | 1dq5.1 | 1dq6.1 | 1enq.1 | 1enr.1 | 1ens.1 | 1gic.1 | 1gkb.1 | 1hqw.1 | 1i3h.1 | 1jbc.1 | 1jn2.1 | 1jn2.2 | 1joj.1 | 1joj.2 | 1jui.1 | 1jui.2 | 1jw6.1 | 1jw6.2 | 1jyc.1 more...less...1jyc.2 | 1jyi.1 | 1jyi.2 | 1nls.1 | 1nxd.1 | 1nxd.2 | 1nxd.3 | 1nxd.4 | 1nxd.5 | 1nxd.6 | 1nxd.7 | 1nxd.8 | 1ona.1 | 1qdc.1 | 1qdo.1 | 1qgl.1 | 1qny.1 | 1scr.1 | 1scs.1 | 1tei.1 | 1tei.2 | 1tei.3 | 1val.1 | 1vam.1 | 1vln.1 | 1vln.2 | 1xqn.1 | 2a7a.1 | 2ctv.1 | 2enr.1 | 2g4i.1 | 2uu8.1 | 2yz4.1 | 3d4k.1 | 3enr.1 | 3nwk.1 | 3nwk.2 | 3nwk.3 | 3nwk.4 | 3qlq.1 | 4czs.1 | 4p9w.1 | 4p9x.1 | 4p9y.1 | 5cna.1 | 5o6n.1 | 5wey.1 | 5ygm.1 | 5z5l.1 | 5z5l.2 | 5z5n.1 | 5z5p.1 | 5z5y.1 | 5z5y.2 | 5zac.1 | 6ahg.1 | 6gw9.1 | 6h2m.1 | 7mg1.1 | 7mg2.1 | 7mg3.1 | 7mg4.1 | 7mg5.1 | 7mg6.1 | 7mg7.1 | 7mg8.1 | 7mg9.1 | 7mga.1 | 7mgb.1 | 7mgc.1 | 7mgd.1 | 8wmg.1 | 8wmk.1 | 9b33.1 | 9b34.1 | 9b36.1 | 9b37.1 | 9j1a.1 | 9j1b.1 | 9j1c.1 | 9j1d.1 | 9j1f.1 | 9j1f.2