SMTL ID : 6ahg.1

Trimeric structure of concanavalin A from Canavalia ensiformis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1 CA.5: 4 residues within 4Å: Chain B: D.10, Y.12, N.14, D.19 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.1 CA.8: 4 residues within 4Å: Chain C: D.10, Y.12, N.14, D.19 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.10, C:Y.12, C:D.19, H2O.1

6 x CD: CADMIUM ION(Non-covalent)

CD.2: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:H.24, H2O.1, H2O.1 CD.3: 5 residues within 4Å: Chain A: K.59, D.80, D.82, N.83 Chain B: D.16 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.80, A:D.82, B:D.16, H2O.1 CD.4: 5 residues within 4Å: Chain A: D.16 Chain C: K.59, D.80, D.82, N.83 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:D.80, C:D.82, A:D.16, H2O.1 CD.6: 5 residues within 4Å: Chain B: E.8, D.10, D.19, H.24, S.34 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.8, B:D.10, B:H.24, H2O.1, H2O.1 CD.7: 5 residues within 4Å: Chain B: K.59, D.80, D.82, N.83 Chain C: D.16 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:D.80, B:D.82, C:D.16, H2O.1 CD.9: 5 residues within 4Å: Chain C: E.8, D.10, D.19, H.24, S.34 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.8, C:D.10, C:H.24, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, Y.R. et al., Cadmium-substituted concanavalin A and its trimeric complexation. J. Microbiol. Biotechnol. (2018)

Release Date

2018-11-21

Peptides

Concanavalin-A,Concanavalin-A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Concanavalin-A,Concanavalin-A

Related Entries With Identical Sequence