SMTL ID : 5z5l.1 (1 other biounit)

Crystal structure of ConA-R5M

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.8, A:D.19, A:H.24, H2O.1 MN.3: 2 residues within 4Å: Chain B: E.8, D.19 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.8, B:D.19, H2O.1, H2O.1

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: Y.12, N.14, D.19 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.12, A:D.19, H2O.1, H2O.1 CA.4: 3 residues within 4Å: Chain B: Y.12, N.14, D.19 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.12, B:D.19, H2O.2

1 x 96O: (1-methyl-1H-1,2,3-triazol-4-yl)methyl alpha-D-mannopyranoside(Non-covalent)

96O.5: 9 residues within 4Å: Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.14, B:G.98, B:L.99, B:Y.100, B:Y.100, B:D.208, B:R.228, B:R.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, R.T. et al., Crystal structure of ConA-R5M. To Be Published

Release Date

2019-04-10

Peptides

Concanavalin-A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Concanavalin-A

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