SMTL ID : 1jyi.2 (1 other biounit)

CONCANAVALIN A/12-MER PEPTIDE COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-4-4-mer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1, H2O.1 MN.3: 5 residues within 4Å: Chain B: E.8, D.10, D.19, H.24, S.34 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24, H2O.4 MN.5: 4 residues within 4Å: Chain E: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.8, E:D.10, E:D.19, E:H.24, H2O.7, H2O.7 MN.7: 5 residues within 4Å: Chain F: E.8, D.10, D.19, H.24, S.34 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.8, F:D.10, F:D.19, F:H.24, H2O.10

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.10, A:D.10, A:Y.12, A:D.19 CA.4: 4 residues within 4Å: Chain B: D.10, Y.12, N.14, D.19 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.10, B:D.10, B:Y.12 CA.6: 4 residues within 4Å: Chain E: D.10, Y.12, N.14, D.19 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.10, E:D.10, E:Y.12, E:D.19 CA.8: 4 residues within 4Å: Chain F: D.10, Y.12, N.14, D.19 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.10, F:D.10, F:Y.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, D. et al., Structural and Functional Consequences of Peptide-carbohydrate Mimicry. Crystal Structure of a Carbohydrate-mimicking Peptide Bound to Concanavalin A. J.Biol.Chem. (2000)

Release Date

2002-09-12

Peptides

Concanavalin-Br: ABEF
12-mer peptide: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

E
C

F
D

C
R

D
S

G
R

H
S

Concanavalin-Br

12-mer peptide

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