SMTL ID : 1rjo.1

AGAO + Xe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.21 CU.14: 3 residues within 4Å: Chain B: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.42

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: D.438, M.439, F.444, D.579, I.580 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.579, A:I.580 NA.15: 5 residues within 4Å: Chain B: D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.579, B:D.579, B:I.580

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, Y.385 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.316, B:Y.385, B:Y.385, A:I.349 Water bridges: B:K.399 Salt bridges: B:H.343, B:K.399, A:R.365 SO4.16: 8 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, Y.385 Chain B: G.348, I.349, R.365 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:I.349, A:L.316, A:Y.385 Salt bridges: B:R.365, A:H.343, A:K.399 Water bridges: A:K.399

14 x XE: XENON(Non-covalent)

XE.4: 5 residues within 4Å: Chain A: I.236, W.238, W.241, L.243, L.388 No protein-ligand interaction detected (PLIP) XE.5: 5 residues within 4Å: Chain A: A.398, A.400, L.588, D.603, V.605 No protein-ligand interaction detected (PLIP) XE.6: 3 residues within 4Å: Chain A: R.69, L.88, D.89 No protein-ligand interaction detected (PLIP) XE.7: 4 residues within 4Å: Chain A: M.369, I.371, W.386, L.388 No protein-ligand interaction detected (PLIP) XE.8: 6 residues within 4Å: Chain A: I.18, V.21, Q.22, I.37, L.40, G.331 No protein-ligand interaction detected (PLIP) XE.9: 4 residues within 4Å: Chain A: A.13, I.18, L.40, V.325 No protein-ligand interaction detected (PLIP) XE.10: 2 residues within 4Å: Chain A: G.378 Chain B: W.357 No protein-ligand interaction detected (PLIP) XE.17: 5 residues within 4Å: Chain B: I.236, W.238, W.241, L.243, L.388 No protein-ligand interaction detected (PLIP) XE.18: 5 residues within 4Å: Chain B: A.398, A.400, L.588, D.603, V.605 No protein-ligand interaction detected (PLIP) XE.19: 3 residues within 4Å: Chain B: R.69, L.88, D.89 No protein-ligand interaction detected (PLIP) XE.20: 4 residues within 4Å: Chain B: M.369, I.371, W.386, L.388 No protein-ligand interaction detected (PLIP) XE.21: 6 residues within 4Å: Chain B: I.18, V.21, Q.22, I.37, L.40, G.331 No protein-ligand interaction detected (PLIP) XE.22: 4 residues within 4Å: Chain B: A.13, I.18, L.40, V.325 No protein-ligand interaction detected (PLIP) XE.23: 2 residues within 4Å: Chain A: W.357 Chain B: G.378 No protein-ligand interaction detected (PLIP)

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 11 residues within 4Å: Chain A: R.530, R.531, P.551, T.552, F.555, V.556, H.559, S.560, G.561, G.562, A.563 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.530, A:F.555, A:H.559, A:A.563 Water bridges: A:A.533 GOL.12: 6 residues within 4Å: Chain A: V.157, D.159, H.168, V.195, P.196, A.197 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.159, A:A.197 Water bridges: A:V.195, A:V.195 GOL.13: 5 residues within 4Å: Chain A: D.442, G.443, F.444, T.445, N.497 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.444, A:T.445, A:T.445, A:N.497 Water bridges: A:D.442, A:T.445 GOL.24: 11 residues within 4Å: Chain B: R.530, R.531, P.551, T.552, F.555, V.556, H.559, S.560, G.561, G.562, A.563 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.530, B:F.555, B:H.559, B:A.563 Water bridges: B:A.533 GOL.25: 6 residues within 4Å: Chain B: V.157, D.159, H.168, V.195, P.196, A.197 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.159, B:A.197 Water bridges: B:V.195, B:V.195 GOL.26: 5 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.444, B:T.445, B:N.497 Water bridges: B:D.442, B:T.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duff, A.P. et al., Using Xenon as a Probe for Dioxygen-binding Sites in Copper Amine Oxidases. J.Mol.Biol. (2004)

Release Date

2004-12-07

Peptides

Phenylethylamine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phenylethylamine oxidase

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