- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: D.438, M.439, F.444, D.579, I.580
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.579, A:I.580
NA.15: 5 residues within 4Å:- Chain B: D.438, M.439, F.444, D.579, I.580
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.579, B:D.579, B:I.580
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 8 residues within 4Å:- Chain A: G.348, I.349, R.365
- Chain B: D.314, C.315, L.316, H.343, Y.385
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:L.316, B:Y.385, B:Y.385, A:I.349
- Water bridges: B:K.399
- Salt bridges: B:H.343, B:K.399, A:R.365
SO4.16: 8 residues within 4Å:- Chain A: D.314, C.315, L.316, H.343, Y.385
- Chain B: G.348, I.349, R.365
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:I.349, A:L.316, A:Y.385
- Salt bridges: B:R.365, A:H.343, A:K.399
- Water bridges: A:K.399
- 14 x XE: XENON(Non-covalent)
XE.4: 5 residues within 4Å:- Chain A: I.236, W.238, W.241, L.243, L.388
No protein-ligand interaction detected (PLIP)XE.5: 5 residues within 4Å:- Chain A: A.398, A.400, L.588, D.603, V.605
No protein-ligand interaction detected (PLIP)XE.6: 3 residues within 4Å:- Chain A: R.69, L.88, D.89
No protein-ligand interaction detected (PLIP)XE.7: 4 residues within 4Å:- Chain A: M.369, I.371, W.386, L.388
No protein-ligand interaction detected (PLIP)XE.8: 6 residues within 4Å:- Chain A: I.18, V.21, Q.22, I.37, L.40, G.331
No protein-ligand interaction detected (PLIP)XE.9: 4 residues within 4Å:- Chain A: A.13, I.18, L.40, V.325
No protein-ligand interaction detected (PLIP)XE.10: 2 residues within 4Å:- Chain A: G.378
- Chain B: W.357
No protein-ligand interaction detected (PLIP)XE.17: 5 residues within 4Å:- Chain B: I.236, W.238, W.241, L.243, L.388
No protein-ligand interaction detected (PLIP)XE.18: 5 residues within 4Å:- Chain B: A.398, A.400, L.588, D.603, V.605
No protein-ligand interaction detected (PLIP)XE.19: 3 residues within 4Å:- Chain B: R.69, L.88, D.89
No protein-ligand interaction detected (PLIP)XE.20: 4 residues within 4Å:- Chain B: M.369, I.371, W.386, L.388
No protein-ligand interaction detected (PLIP)XE.21: 6 residues within 4Å:- Chain B: I.18, V.21, Q.22, I.37, L.40, G.331
No protein-ligand interaction detected (PLIP)XE.22: 4 residues within 4Å:- Chain B: A.13, I.18, L.40, V.325
No protein-ligand interaction detected (PLIP)XE.23: 2 residues within 4Å:- Chain A: W.357
- Chain B: G.378
No protein-ligand interaction detected (PLIP)- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 11 residues within 4Å:- Chain A: R.530, R.531, P.551, T.552, F.555, V.556, H.559, S.560, G.561, G.562, A.563
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.530, A:F.555, A:H.559, A:A.563
- Water bridges: A:A.533
GOL.12: 6 residues within 4Å:- Chain A: V.157, D.159, H.168, V.195, P.196, A.197
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.159, A:A.197
- Water bridges: A:V.195, A:V.195
GOL.13: 5 residues within 4Å:- Chain A: D.442, G.443, F.444, T.445, N.497
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:F.444, A:T.445, A:T.445, A:N.497
- Water bridges: A:D.442, A:T.445
GOL.24: 11 residues within 4Å:- Chain B: R.530, R.531, P.551, T.552, F.555, V.556, H.559, S.560, G.561, G.562, A.563
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.530, B:F.555, B:H.559, B:A.563
- Water bridges: B:A.533
GOL.25: 6 residues within 4Å:- Chain B: V.157, D.159, H.168, V.195, P.196, A.197
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.159, B:A.197
- Water bridges: B:V.195, B:V.195
GOL.26: 5 residues within 4Å:- Chain B: D.442, G.443, F.444, T.445, N.497
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:F.444, B:T.445, B:N.497
- Water bridges: B:D.442, B:T.445
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duff, A.P. et al., Using Xenon as a Probe for Dioxygen-binding Sites in Copper Amine Oxidases. J.Mol.Biol. (2004)
- Release Date
- 2004-12-07
- Peptides
- Phenylethylamine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 14 x XE: XENON(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duff, A.P. et al., Using Xenon as a Probe for Dioxygen-binding Sites in Copper Amine Oxidases. J.Mol.Biol. (2004)
- Release Date
- 2004-12-07
- Peptides
- Phenylethylamine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A