SMTL ID : 1sa5.1

Rat protein farnesyltransferase complexed with FPP and BMS-214662

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: BMV.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 15 residues within 4Å: Chain A: K.164, Y.166, Y.200 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: BMV.3 18 PLIP interactions: 14 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.205, B:Y.251, B:W.303, A:Y.200 Hydrogen bonds: B:Y.300 Water bridges: B:R.291, B:R.291, B:R.291, B:R.291, B:L.295, A:K.164, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x BMV: 3-BENZYL-1-(1H-IMIDAZOL-4-YLMETHYL)-4-(THIEN-2-YLSULFONYL)-2,3,4,5-TETRAHYDRO-1H-1,4-BENZODIAZEPINE-7-CARBONITRILE(Non-covalent)

BMV.3: 12 residues within 4Å: Chain B: Y.93, L.96, W.102, W.106, D.297, C.299, D.359, F.360, Y.361, H.362 Ligands: ZN.1, FPP.2 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.106, B:Y.361, B:Y.361 Hydrogen bonds: B:D.359, B:F.360, B:Y.361 Water bridges: B:S.99 pi-Stacking: B:W.102, B:Y.361

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 5 residues within 4Å: Chain B: Y.81, L.89, T.90, Y.93, F.360 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.81, B:Y.93, B:F.360 Hydrogen bonds: B:T.90 Water bridges: B:Q.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reid, T.S. et al., Crystal Structures of the Anticancer Clinical Candidates R115777 (Tipifarnib) and BMS-214662 Complexed with Protein Farnesyltransferase Suggest a Mechanism of FTI Selectivity. Biochemistry (2004)

Release Date

2004-06-08

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

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