SMTL ID : 1sii.1

AGAO in covalent complex with the inhibitor NOBA ("4-(2-naphthyloxy)-2-butyn-1-amine")

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.13 CU.6: 3 residues within 4Å: Chain B: H.429, H.431, H.590 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.32

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: R.47, D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.438, A:I.580, A:I.580 NA.7: 6 residues within 4Å: Chain B: R.47, D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.438, B:D.579, B:I.580

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 10 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, E.345, V.370, Y.385 12 PLIP interactions: 2 interactions with chain A, 10 interactions with chain B Hydrogen bonds: A:I.349, B:L.316 Salt bridges: A:R.365, B:H.343 Water bridges: B:H.343, B:H.343, B:H.343, B:H.343, B:Y.385, B:Y.385, B:Y.385, B:K.399 SO4.8: 10 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, E.345, V.370, Y.385 Chain B: G.348, I.349, R.365 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.316, B:I.349 Water bridges: A:H.343, A:Y.385, A:K.399 Salt bridges: A:H.343, B:R.365

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 15 residues within 4Å: Chain A: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.551, A:H.559, A:S.560, A:A.563 Water bridges: A:A.533, A:F.555 GOL.5: 7 residues within 4Å: Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.159, A:V.195 Water bridges: A:V.195 GOL.9: 15 residues within 4Å: Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.551, B:H.559, B:S.560, B:A.563 Water bridges: B:A.533, B:F.555 GOL.10: 7 residues within 4Å: Chain B: L.125, V.157, D.159, H.168, V.195, P.196, A.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.159, B:V.195 Water bridges: B:V.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Connell, K.M. et al., Differential Inhibition of Six Copper Amine Oxidases by a Family of 4-(Aryloxy)-2-butynamines: Evidence for a New Mode of Inactivation. Biochemistry (2004)

Release Date

2004-09-07

Peptides

Phenylethylamine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phenylethylamine oxidase

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