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SMTL ID : 1ye1.1

T-To-T(High) quaternary transitions in human hemoglobin: betaY35A oxy (2MM IHP, 20% PEG) (1 test set)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.50 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:	18 residues within 4Å: Chain A: T.39, Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:F.43, A:F.43, A:A.65, A:L.83, A:L.83, A:L.86, A:L.91, A:L.91, A:V.93, A:V.93, A:F.98, A:L.101, A:V.132, A:L.136 Salt bridges: A:H.45, A:K.61, A:K.61 pi-Stacking: A:H.58 Metal complexes: A:H.87
HEM.2:	13 residues within 4Å: Chain B: F.41, F.42, H.63, K.66, V.67, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:F.41, B:F.41, B:F.41, B:F.42, B:K.66, B:V.67, B:L.91, B:L.96, B:V.98, B:F.103, B:L.106, B:L.141 Metal complexes: B:H.92
HEM.3:	16 residues within 4Å: Chain C: Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:F.43, C:F.43, C:F.43, C:A.65, C:L.86, C:L.91, C:L.91, C:V.93, C:V.93, C:N.97, C:F.98, C:F.98, C:L.101, C:L.136 Salt bridges: C:H.45, C:K.61, C:K.61 pi-Stacking: C:H.58 Metal complexes: C:H.87
HEM.4:	16 residues within 4Å: Chain D: L.31, F.41, F.42, F.45, H.63, K.66, V.67, A.70, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141 17 PLIP interactions: 17 interactions with chain D, Hydrophobic interactions: D:L.31, D:F.41, D:F.41, D:F.42, D:F.42, D:V.67, D:L.88, D:L.96, D:V.98, D:V.98, D:F.103, D:L.106, D:L.141 Salt bridges: D:K.66, D:K.66 pi-Stacking: D:H.63 Metal complexes: D:H.92

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kavanaugh, J.S. et al., Crystallographic evidence for a new ensemble of ligand-induced allosteric transitions in hemoglobin: the T-to-T(high) quaternary transitions. Biochemistry (2005)

Release Date

2005-01-04

Peptides

Hemoglobin alpha chain: AC
Hemoglobin beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Hemoglobin alpha chain

Toggle Identical (AC)

Hemoglobin beta chain

Toggle Identical (BD)

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