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SMTL ID : 2ic0.1
Urate oxidase under 2.0 MPa pressure of xenon
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.78 Å
Oligo State
homo-tetramer
Ligands
4 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.1:
5 residues within 4Å:
Chain A:
I.89
,
Y.92
,
N.93
,
I.95
,
E.137
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:I.95
,
A:H.96
,
A:E.137
NA.4:
5 residues within 4Å:
Chain B:
I.89
,
Y.92
,
N.93
,
I.95
,
E.137
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:I.89
,
B:I.95
,
B:H.96
NA.7:
5 residues within 4Å:
Chain C:
I.89
,
Y.92
,
N.93
,
I.95
,
E.137
2
PLIP interactions
:
2 interactions with chain C
Hydrogen bonds:
C:I.95
,
C:H.96
NA.10:
5 residues within 4Å:
Chain D:
I.89
,
Y.92
,
N.93
,
I.95
,
E.137
2
PLIP interactions
:
2 interactions with chain D
Hydrogen bonds:
D:I.95
,
D:E.137
4 x
AZA
:
8-AZAXANTHINE
(Non-covalent)
AZA.2:
12 residues within 4Å:
Chain A:
F.160
,
L.171
,
R.177
,
S.227
,
V.228
,
Q.229
,
N.255
Chain B:
Y.9
,
I.55
,
A.57
,
T.58
,
D.59
13
PLIP interactions
:
9 interactions with chain A
,
4 interactions with chain B
Hydrogen bonds:
A:R.177
,
A:R.177
,
A:V.228
,
A:Q.229
,
A:Q.229
,
A:N.255
,
B:T.58
,
B:D.59
Water bridges:
A:H.257
,
B:T.58
,
B:T.58
pi-Stacking:
A:F.160
,
A:F.160
AZA.5:
12 residues within 4Å:
Chain A:
Y.9
,
I.55
,
A.57
,
T.58
,
D.59
Chain B:
F.160
,
L.171
,
R.177
,
S.227
,
V.228
,
Q.229
,
N.255
13
PLIP interactions
:
9 interactions with chain B
,
4 interactions with chain A
Hydrogen bonds:
B:R.177
,
B:R.177
,
B:V.228
,
B:Q.229
,
B:Q.229
,
B:N.255
,
A:T.58
,
A:D.59
Water bridges:
B:H.257
,
A:T.58
,
A:T.58
pi-Stacking:
B:F.160
,
B:F.160
AZA.8:
12 residues within 4Å:
Chain C:
F.160
,
L.171
,
R.177
,
S.227
,
V.228
,
Q.229
,
N.255
Chain D:
Y.9
,
I.55
,
A.57
,
T.58
,
D.59
10
PLIP interactions
:
8 interactions with chain C
,
2 interactions with chain D
Hydrogen bonds:
C:R.177
,
C:R.177
,
C:V.228
,
C:Q.229
,
C:Q.229
,
C:N.255
,
D:T.58
,
D:D.59
pi-Stacking:
C:F.160
,
C:F.160
AZA.11:
12 residues within 4Å:
Chain C:
Y.9
,
I.55
,
A.57
,
T.58
,
D.59
Chain D:
F.160
,
L.171
,
R.177
,
S.227
,
V.228
,
Q.229
,
N.255
10
PLIP interactions
:
8 interactions with chain D
,
2 interactions with chain C
Hydrogen bonds:
D:R.177
,
D:R.177
,
D:V.228
,
D:Q.229
,
D:Q.229
,
D:N.255
,
C:T.58
,
C:D.59
pi-Stacking:
D:F.160
,
D:F.160
4 x
XE
:
XENON
(Non-covalent)
XE.3:
2 residues within 4Å:
Chain A:
T.231
,
L.253
No protein-ligand interaction detected (PLIP)
XE.6:
2 residues within 4Å:
Chain B:
T.231
,
L.253
No protein-ligand interaction detected (PLIP)
XE.9:
2 residues within 4Å:
Chain C:
T.231
,
L.253
No protein-ligand interaction detected (PLIP)
XE.12:
2 residues within 4Å:
Chain D:
T.231
,
L.253
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Colloc'h, N. et al., Protein Crystallography under Xenon and Nitrous Oxide Pressure: Comparison with In Vivo Pharmacology Studies and Implications for the Mechanism of Inhaled Anesthetic Action. Biophys.J. (2007)
Release Date
2007-02-06
Peptides
Uricase:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
C
A
D
A
Export Alignment
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Secondary Structure
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Toggle Identical (ABCD)
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Cartoon
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Tube
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